Browse Element(s) Details


OsAffx.19802.1.S1_at

Description tigr:9640.m02331
TID=OsAffx.19802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24450Os.26894.1.A1_x_at2/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24450OsAffx.15069.1.S1_at1/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24460OsAffx.7686.1.S1_at11/1112+13964813..13965765hypothetical protein
LOC_Os12g24480OsAffx.19802.1.S1_at11/1112+13974921..13977301hypothetical protein
LOC_Os12g24480OsAffx.13388.1.S1_at1/1112+13974921..13977301hypothetical protein
LOC_Os12g24490Os.55823.1.S1_at11/1112+13979331..13980242Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19802.1.S1_at--76--911Chr12:13976911..13976935 (25 bp)
AGGCGGCGCTGGAACCAAGGCCTCT
LOC_Os12g24480
OsAffx.19802.1.S1_at--411--2651Chr12:13976923..13976947 (25 bp)
AACCAAGGCCTCTGGCGGTGGCGTT
LOC_Os12g24480
OsAffx.19802.1.S1_at--789--7571Chr12:13977021..13977045 (25 bp)
GGGCTGCTCTATTTCATGCTCCTGG
LOC_Os12g24480
OsAffx.19802.1.S1_at--90--10211Chr12:13977030..13977054 (25 bp)
TATTTCATGCTCCTGGCCTCCATGC
LOC_Os12g24480
OsAffx.19802.1.S1_at--892--10551Chr12:13977092..13977116 (25 bp)
TTCTTTCTTCCGCAAGCTAATGAGC
LOC_Os12g24480
OsAffx.19802.1.S1_at--672--1572Chr12:13977106..13977130 (25 bp)
AGCTAATGAGCTGGTGGTCGCCACC
LOC_Os12g24480
OsAffx.19802.1.S1_at--451--10352Chr12:13977162..13977186 (25 bp)
TTTTTGCAATGCTCTCTCTCCAAAA
LOC_Os12g24480
OsAffx.19802.1.S1_at--109--2611Chr12:13977185..13977209 (25 bp)
AACCGTGCTCCAACAACGACGGGCA
LOC_Os12g24480
OsAffx.19802.1.S1_at--75--2591Chr12:13977199..13977223 (25 bp)
AACGACGGGCAATGTTTGGATACAA
LOC_Os12g24480
OsAffx.19802.1.S1_at--447--3051Chr12:13977227..13977251 (25 bp)
AATCGTCAAAGCTATCGCATTCACA
LOC_Os12g24480
OsAffx.19802.1.S1_at--386--4871Chr12:13977237..13977261 (25 bp)
GCTATCGCATTCACAGGAATTCAGT
LOC_Os12g24480
Target Sequence 
AGGCGGCGCTGGAACCAAGGCCTCTGGCGGTGGCGTTGAAGCACGGGGGCGCGGCGGTGGAGCATGGGGGCGTGGTGCCG
GCGACGAGCGACGACGAGGAGGTGCTGCCCGGGCTGCTCTATTTCATGCTCCTGGCCTCCATGCGGCGGCGGTCTCTACA
GGCGGCGTCGACGACCTCCGCTTCTTTCTTCCGCAAGCTAATGAGCTGGTGGTCGCCACCGTCGCCCGCTGGTGGTCGTT
GCCGCCGCTCCTTTTTGCAATGCTCTCTCTCCAAAACCGTGCTCCAACAACGACGGGCAATGTTTGGATACAAATTAATC
GTCAAAGCTATCGCATTCACAGGAATTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis