Browse Element(s) Details


OsAffx.19803.1.S1_at

Description tigr:9640.m02333
TID=OsAffx.19803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24460OsAffx.7686.1.S1_at11/1112+13964813..13965765hypothetical protein
LOC_Os12g24480OsAffx.19802.1.S1_at11/1112+13974921..13977301hypothetical protein
LOC_Os12g24480OsAffx.13388.1.S1_at1/1112+13974921..13977301hypothetical protein
LOC_Os12g24490Os.55823.1.S1_at11/1112+13979331..13980242Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19803.1.S1_at--995--8651Chr12:13987499..13987716 (25 bp)
TGTGGGCCTGTGAAAGCTTTACCGC
LOC_Os12g24500
OsAffx.19803.1.S1_at--514--5772Chr04:12605693..12605714 (22 bp)
GACGACTTAACCCTAGCTCAGAAAT
NONE
OsAffx.19803.1.S1_at--508--9311Chr12:13985202..13985226 (25 bp)
TCCCCGCATCCTATAAAGTCTTTAT
LOC_Os12g24500
OsAffx.19803.1.S1_at--24--2831Chr12:13985187..13985211 (25 bp)
AAGTCTTTATTCTCGGTGAAGTACG
LOC_Os12g24500
OsAffx.19803.1.S1_at--563--6991Chr12:13985167..13985191 (25 bp)
GTACGGCATCAAGTGCAACAGCCTG
LOC_Os12g24500
OsAffx.19803.1.S1_at--892--431Chr12:13985130..13985154 (25 bp)
ATCTTCTCTCTCAGATCACTGTAGA
LOC_Os12g24500
OsAffx.19803.1.S1_at--701--2491Chr12:13985102..13985126 (25 bp)
AACAGTTTACAACCACAGCCGTTGG
LOC_Os12g24500
OsAffx.19803.1.S1_at--576--2151Chr12:13985088..13985112 (25 bp)
ACAGCCGTTGGATTACTCTTGGAGC
LOC_Os12g24500
OsAffx.19803.1.S1_at--507--10471Chr12:13985076..13985100 (25 bp)
TTACTCTTGGAGCATCACGTTCGTC
LOC_Os12g24500
OsAffx.19803.1.S1_at--999--4491Chr12:13984029..13984053 (25 bp)
GCCGATGCAGTTTCCGCAGCAAAGC
LOC_Os12g24500
OsAffx.19803.1.S1_at--415--3291Chr12:13984010..13984034 (25 bp)
CAAAGCGCGGAGTGCCATCTAGTGA
LOC_Os12g24500
Target Sequence 
TGTGGGCCTGTGAAAGCTTTACCGCGGGGGTGCGGTAACCGCGCCAAAAACGGTAAGGGGAACCCTAGTGAGAGGGACAT
GGACGACTTAACCCTAGCTCAGAAATTCCCCATCTCCGCCGCCGCGGCGGACGATGAGGCGACGACGGCGCGGCCGCTTG
GAACTGCGGGAGGCATCCGCATCCAGCTCCCCGCATCCTATAAAGTCTTTATTCTCGGTGAAGTACGGCATCAAGTGCAA
CAGCCTGCCACGTTATCCCATCTTCTCTCTCAGATCACTGTAGAAACAACAGTTTACAACCACAGCCGTTGGATTACTCT
TGGAGCATCACGTTCGTCGCCGATGCAGTTTCCGCAGCAAAGCGCGGAGTGCCATCTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis