Browse Element(s) Details


Os.50817.1.S1_x_at

Description gb:AK058760.1
DB_XREF= gi:32968778
TID=Os.50817.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B10, full insert sequence.
FL= gb:AK058760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2454011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50817.1.S1_x_at--970--4431Chr12:14013469..14013493 (25 bp)
GCCATTCTACACAATTCTGTTCTGT
LOC_Os12g24540
Os.50817.1.S1_x_at--38--7371Chr12:14013296..14013320 (25 bp)
GTGAAATGTGGTCCTTCTCACAACC
LOC_Os12g24540
Os.50817.1.S1_x_at--1074--1271Chr12:14013255..14013279 (25 bp)
AGATCTTTTATCCACCTCATTTGGC
LOC_Os12g24540
Os.50817.1.S1_x_at--59--8451Chr12:14013233..14013257 (25 bp)
GGCCATGTAAAGAAGCCCTCACAAT
LOC_Os12g24540
Os.50817.1.S1_x_at--600--5551Chr12:14013135..14013159 (25 bp)
GAAACCCAATGAGTGCCAGACTGTA
LOC_Os12g24540
Os.50817.1.S1_x_at--1144--4891Chr12:14013079..14013103 (25 bp)
GCTTAACTATGCCAGATGCTCTGAT
LOC_Os12g24540
Os.50817.1.S1_x_at--270--8151Chr12:14013054..14013078 (25 bp)
GGACAAATCTTCAACTGTTCCAGAG
LOC_Os12g24540
Os.50817.1.S1_x_at--944--851Chr12:14013018..14013042 (25 bp)
ATGGCAGTAAGAATTTCCTCCTTTT
LOC_Os12g24540
Os.50817.1.S1_x_at--848--1531Chr12:14012983..14013007 (25 bp)
AGCATTTCTCGCTTTTTGCAAAAAG
LOC_Os12g24540
Os.50817.1.S1_x_at--1089--1191Chr12:14012960..14012984 (25 bp)
AGTTTGCTGTTGATTCAGCTGCCAT
LOC_Os12g24540
Os.50817.1.S1_x_at--1005--4771Chr12:14012943..14012967 (25 bp)
GCTGCCATCAGCCAAGCATTGTGAA
LOC_Os12g24540
Target Sequence 
GCCATTCTACACAATTCTGTTCTGTTGACAAACTTAGCTTATCTGCAGTAAAACCTATGAGTGAACGGAACATGAAGGAT
TCCTCTGCTAAAAGGAATAAAACATTTGAAGCTACTAATGTGATAGCAGCTGAAAAAGCTGCTTCCAGACCAGCAGATCA
ATCTGAGCACATTGTGAAATGTGGTCCTTCTCACAACCCAATGTGTAGGCCTAAAGATCTTTTATCCACCTCATTTGGCC
ATGTAAAGAAGCCCTCACAATTGTACGGGCAAACCAATGAGCAGGATATGAGAAACACTTCGAGCAACAAAGCTTCCACA
GATGGTAGCAAGTTGAAACCCAATGAGTGCCAGACTGTATCAGTCAAGACAGGAAGATTAGTTGATGGCAGCTTAACTAT
GCCAGATGCTCTGATGGACAAATCTTCAACTGTTCCAGAGTTGGATTTCATATGGCAGTAAGAATTTCCTCCTTTTATAT
CTCATAAGCATTTCTCGCTTTTTGCAAAAAGTTTGCTGTTGATTCAGCTGCCATCAGCCAAGCATTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50817.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis