Browse Element(s) Details


OsAffx.7687.1.S1_at

Description tigr:9640.m02336
TID=OsAffx.7687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2453011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7687.1.S1_at--656--9331Chr12:14007837..14007861 (25 bp)
TCGCCGCCGGGCTGTTCATGTTCGC
LOC_Os12g24530
OsAffx.7687.1.S1_at--16--4251Chr12:14007831..14007855 (25 bp)
CCGGGCTGTTCATGTTCGCCAGCCA
LOC_Os12g24530
OsAffx.7687.1.S1_at--528--4431Chr12:14007769..14007793 (25 bp)
GCCATGTGCCTGTACACGTGCCTGT
LOC_Os12g24530
OsAffx.7687.1.S1_at--677--771Chr12:14007766..14007790 (25 bp)
ATGTGCCTGTACACGTGCCTGTGCC
LOC_Os12g24530
OsAffx.7687.1.S1_at--202--8751Chr12:14007759..14007783 (25 bp)
TGTACACGTGCCTGTGCCTGAACAA
LOC_Os12g24530
OsAffx.7687.1.S1_at--973--9851Chr12:14007757..14007781 (25 bp)
TACACGTGCCTGTGCCTGAACAACG
LOC_Os12g24530
OsAffx.7687.1.S1_at--268--1911Chr12:14007754..14007778 (25 bp)
ACGTGCCTGTGCCTGAACAACGCGG
LOC_Os12g24530
OsAffx.7687.1.S1_at--317--7291Chr12:14007752..14007776 (25 bp)
GTGCCTGTGCCTGAACAACGCGGCG
LOC_Os12g24530
OsAffx.7687.1.S1_at--1101--6711Chr12:14007691..14007715 (25 bp)
GTTCTGCTGCTTCCCGGTCAGGCGC
LOC_Os12g24530
OsAffx.7687.1.S1_at--958--7011Chr12:14007548..14007572 (25 bp)
GTACAGTAAGGGTTCGGGCGGCGCG
LOC_Os12g24530
OsAffx.7687.1.S1_at--1072--4551Chr12:14007507..14007531 (25 bp)
GCGCCGTGTGCATCGGAGTCGTGCG
LOC_Os12g24530
Target Sequence 
TCGCCGCCGGGCTGTTCATGTTCGCCAGCCACGTCTTGGCCGCCGTCGCCGCCGCCGTGCTCTTCGCCGCCATGTGCCTG
TACACGTGCCTGTGCCTGAACAACGCGGCGCCGGAGGAGGAAGAGGAGCAGCAGCAGCAGCCGCCTGTTCTGCTGCTTCC
CGGTCAGGCGCTGCGCGTCGCCGTGATGCCGCCATCGGTGGGGCGGCTGCAGCAGCAGGAGGTCAACGGCGGCGGCGGCG
GCGGAGGCCTCAGGCAGGAGGACGTCGAGGCCGCCATCCCGGCGTTCGAGTACAGTAAGGGTTCGGGCGGCGCGGCGGAG
GCGGAGCAGTGCGCCGTGTGCATCGGAGTCGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis