Browse Element(s) Details


OsAffx.7688.1.S1_at

Description tigr:9640.m02337
TID=OsAffx.7688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2454011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7688.1.S1_at--19--3811Chr12:14010905..14010929 (25 bp)
CTCCCAGAAAGACCATGTTTTCATT
LOC_Os12g24540
OsAffx.7688.1.S1_at--1108--4171Chr12:14010903..14010927 (25 bp)
CCCAGAAAGACCATGTTTTCATTTC
LOC_Os12g24540
OsAffx.7688.1.S1_at--314--3411Chr12:14010901..14010925 (25 bp)
CAGAAAGACCATGTTTTCATTTCTT
LOC_Os12g24540
OsAffx.7688.1.S1_at--233--5571Chr12:14010899..14010923 (25 bp)
GAAAGACCATGTTTTCATTTCTTTC
LOC_Os12g24540
OsAffx.7688.1.S1_at--834--6731Chr12:14010454..14010478 (25 bp)
GTTCATACTCTGCACTGTAAATTTC
LOC_Os12g24540
OsAffx.7688.1.S1_at--1084--10531Chr12:14010453..14010477 (25 bp)
TTCATACTCTGCACTGTAAATTTCT
LOC_Os12g24540
OsAffx.7688.1.S1_at--284--331Chr12:14010450..14010474 (25 bp)
ATACTCTGCACTGTAAATTTCTGCA
LOC_Os12g24540
OsAffx.7688.1.S1_at--534--9911Chr12:14010449..14010473 (25 bp)
TACTCTGCACTGTAAATTTCTGCAC
LOC_Os12g24540
OsAffx.7688.1.S1_at--280--2011Chr12:14010448..14010472 (25 bp)
ACTCTGCACTGTAAATTTCTGCACA
LOC_Os12g24540
OsAffx.7688.1.S1_at--963--3771Chr12:14010447..14010471 (25 bp)
CTCTGCACTGTAAATTTCTGCACAA
LOC_Os12g24540
OsAffx.7688.1.S1_at--204--3851Chr12:14010445..14010469 (25 bp)
CTGCACTGTAAATTTCTGCACAACT
LOC_Os12g24540
Target Sequence 
CTCCCAGAAAGACCATGTTTTCATTTCTTTCCCCTAAGGTTGAAGAAAATCGGAGTAAGGAACATTCATTGCCTACCGAT
TCACCAGGTTCCCTCTCCCTCTCTCTTGCCTTTCCGGCATCTAGGGAACATGCTGGTAAGTTGCAATCAGAGATACCGAA
GCAGTTGCCTGAGATGAGCAGCCAGAATAAGATATCTTCGATTTGGGACCGACAATGATGGCTGCCCGCTCTTGCGTTCC
TGATGTTTTGCGGGACAGATCGATGTTTGCGTCCTCTGGAGAAACTATCTTGAATACTATGTATCTGCAATGATGCCACT
CAGGTGTGCTGACAAGTAGTTACATCCAGGGGGCAGAACTATTGAACTGCAAAGAACAGAGTTCTGGACGTAAGTGTTAT
TTTGCAGGAAACAGTGATATGCTTTTCAAGACATAGGGTTATGACATGAAAGTTCATACTCTGCACTGTAAATTTCTGCA
CAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis