Browse Element(s) Details


Os.23856.1.A1_s_at

Description gb:CA760678
DB_XREF= gi:25804717
DB_XREF=BR060007A10D05.ab1
CLONE=BR060007A10D05.ab1
TID=Os.23856.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23856 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2454011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23856.1.A1_s_at--487--8171Chr12:14010847..14010871 (25 bp)
GGAACATTCATTGCCTACCGATTCA
LOC_Os12g24540
Os.23856.1.A1_s_at--765--10671Chr12:14010800..14010824 (25 bp)
TTGCCTTTCCGGCATCTAGGGAACA
LOC_Os12g24540
Os.23856.1.A1_s_at--433--6031Chr12:14010756..14010780 (25 bp)
GAGATACCGAAGCAGTTGCCTGAGA
LOC_Os12g24540
Os.23856.1.A1_s_at--334--6691Chr12:14010742..14010766 (25 bp)
GTTGCCTGAGATGAGCAGCCAGAAT
LOC_Os12g24540
Os.23856.1.A1_s_at--610--6511Chr12:14010715..14010739 (25 bp)
GATATCTTCGATTTGGGACCGACAA
LOC_Os12g24540
Os.23856.1.A1_s_at--363--10651Chr12:14010669..14010693 (25 bp)
TTCCTGATGTTTTGCGGGACAGATC
LOC_Os12g24540
Os.23856.1.A1_s_at--1054--3191Chr12:14010598..14010622 (25 bp)
CAATGATGCCACTCAGGTGTGCTGA
LOC_Os12g24540
Os.23856.1.A1_s_at--144--7471Chr12:14010582..14010606 (25 bp)
GTGTGCTGACAAGTAGTTACATCCA
LOC_Os12g24540
Os.23856.1.A1_s_at--743--2491Chr12:14010496..14010520 (25 bp)
AACAGTGATATGCTTTTCAAGACAT
LOC_Os12g24540
Os.23856.1.A1_s_at--69--2011Chr12:14010423..14010447 (25 bp)
ACTCATGTAAAGTTTTGGCCTTAAG
LOC_Os12g24540
Os.23856.1.A1_s_at--173--2251Chr12:14010384..14010408 (25 bp)
AAATTTGAGAGATGTCTGCCGTGGG
LOC_Os12g24540
Target Sequence 
GGAACATTCATTGCCTACCGATTCACCAGGTTCCCTCTCCCTCTCTCTTGCCTTTCCGGCATCTAGGGAACATGCTGGTA
AGTTGCAACCAGAGATACCGAAGCAGTTGCCTGAGATGAGCAGCCAGAATAAGATATCTTCGATTTGGGACCGACAATGA
TGGCTGCCCGCTCTTGCGTTCCTGATGTTTTGCGGGACAGATCGATGTTTGCATCCTCTGGAGAAACTATCTTGAATACT
ATGTATCTGCAATGATGCCACTCAGGTGTGCTGACAAGTAGTTACATCCAAGGGGCAGAACTATTGAACTGCAAAGAACA
GAGTCCTGGACGTGAGTGTTATTTTGCAGGAAACAGTGATATGCTTTTCAAGACATAGGGTTATGACATGAAAGTTCATA
CTTTGCCCTGTAAATTTTTGCACAACTCATGTAAAGTTTTGGCCTTAAGTTGGAAGTCATCTCAAATTTGAGAGATGTCT
GCCGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23856.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis