Browse Element(s) Details


OsAffx.13388.1.S1_at

Description tigr:9631.m04603
TID=OsAffx.13388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4738011/11hypothetical protein
LOC_Os12g244801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47350NANA3+26731889..26732284hypothetical protein
LOC_Os03g47360OsAffx.13387.1.S1_at11/113+26734075..26737852hypothetical protein
LOC_Os03g47360OsAffx.13387.3.S1_x_at1/113+26734075..26737852hypothetical protein
LOC_Os03g47370OsAffx.25600.1.S1_at11/113+26739077..26740433expressed protein
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein
LOC_Os03g47460OsAffx.25605.1.S1_at11/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.22123.1.S1_x_at5/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.3256.1.S1_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460Os.29856.1.S1_x_at1/113+26766619..26771208Ribosome inactivating protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13388.1.S1_at--610--8011Chr03:26743974..26743995 (22 bp)
GGAGGAAATTCTCCCCTTCTCTCGC
LOC_Os03g47380
OsAffx.13388.1.S1_at--1003--10511Chr03:26743852..26743876 (25 bp)
TTCACTTCATCTGCGAACGCGCCTG
LOC_Os03g47380
OsAffx.13388.1.S1_at--593--4111Chr03:26743821..26743845 (25 bp)
CGAAGGAGCATGGATATTGCGAGCT
LOC_Os03g47380
OsAffx.13388.1.S1_at--542--831Chr03:26743812..26743836 (25 bp)
ATGGATATTGCGAGCTCGGTTGTGC
LOC_Os03g47380
OsAffx.13388.1.S1_at--324--4972Chr06:16380094..16380164 (25 bp)
GCATCTGCAGCAGGCACGACAAGGG
NONE
OsAffx.13388.1.S1_at--1083--1211Chr03:26743692..26743716 (25 bp)
AGTTCTGCAAGTGGGTGGACTGGGA
LOC_Os03g47380
OsAffx.13388.1.S1_at--193--1793Chr12:13976619..13976647 (23 bp)
ACCGTCGTCATTCTCGGCATCAGGC
LOC_Os12g24480
OsAffx.13388.1.S1_at--341--10593Chr01:18676941..18677204 (25 bp)
TTCTCGGCATCAGGCTCAACGCGAA
NONE
OsAffx.13388.1.S1_at--755--731Chr03:26743587..26743611 (25 bp)
AGACCCGGCCGCACCAGAAAGAGCG
LOC_Os03g47380
OsAffx.13388.1.S1_at--155--2151Chr03:26743546..26743570 (25 bp)
ACAGAGCAACAGGAGCTGGTTTCCA
LOC_Os03g47380
OsAffx.13388.1.S1_at--1107--3471Chr03:26743537..26743561 (25 bp)
CAGGAGCTGGTTTCCATGGAGGCCC
LOC_Os03g47380
Target Sequence 
GGAGGAAATTCTCCCCTTCTCTCGCCCGTTCTCCGGCGATTCGCGAACCGCCTCCGACGTTGGCCACCGCTGCACCTCGC
CAATTCCCATCCCTAAAAACCCTAGCCCACAGAACCTCCCTCTTCACTTCATCTGCGAACGCGCCTGCGCCGGCGAAGGA
GCATGGATATTGCGAGCTCGGTTGTGCGGCGCGGCGCGCATCTGCAGCAGGCACGACAAGGGGCATGGGTCGGGTGGTTG
ACCCCCTGGCTCTCTTCAAGCGGCCGTCGCCGTCAGCAGGGGAGTTCTGCAAGTGGGTGGACTGGGAGCTTCCCTGCTAC
CTCACCTCCTTCCTCACCGTCGTCATTCTCGGCATCAGGCTCAACGCGAAGCCCAACTTCACCCTGCAGACCCGGCCGCA
CCAGAAAGAGCGCCAACAGGCAACAGCAACAGAGCAACAGGAGCTGGTTTCCATGGAGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis