Browse Element(s) Details


OsAffx.22123.1.S1_x_at

Description gb:NM_188361.1
DB_XREF= gi:34903805
GEN=OSJNBa0016I09.16
TID=OsAffx.22123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.16 (OSJNBa0016I09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474605/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein
LOC_Os03g47460OsAffx.25605.1.S1_at11/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.22123.1.S1_x_at5/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.3256.1.S1_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460Os.29856.1.S1_x_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47470OsAffx.25606.1.S1_at11/113+26779676..26781280Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22123.1.S1_x_at--201--1911Chr01:5864093..5864117 (25 bp)
ACGTGGCGGGCGAACAACGACGCGG
NONE
OsAffx.22123.1.S1_x_at--1048--7631Chr01:5864116..5864140 (25 bp)
GGGAGGGACGGCGAATGGCACGGCG
NONE
OsAffx.22123.1.S1_x_at--335--3791Chr01:5864377..5864401 (25 bp)
CTCGTCGCTGCAAATACTGGCTCAG
NONE
OsAffx.22123.1.S1_x_at--667--7231Chr01:5864380..5864404 (25 bp)
GTCGCTGCAAATACTGGCTCAGCAT
NONE
OsAffx.22123.1.S1_x_at--785--4131Chr01:5864382..5864406 (25 bp)
CGCTGCAAATACTGGCTCAGCATCG
NONE
OsAffx.22123.1.S1_x_at--244--4832Chr03:26767029..26767055 (24 bp)
GCTCAGCATCGTCCACAACAAGAAG
LOC_Os03g47460
OsAffx.22123.1.S1_x_at--410--1531Chr01:5864400..5864424 (25 bp)
AGCATCGTCCACAACAAGAAGAACA
NONE
OsAffx.22123.1.S1_x_at--659--5372Chr03:26767051..26767074 (24 bp)
GAAGAACAGGCTCTTCTACCTGCTA
LOC_Os03g47460
OsAffx.22123.1.S1_x_at--191--4792Chr03:26767059..26767083 (25 bp)
GCTCTTCTACCTGCTACGCTGTTAG
LOC_Os03g47460
OsAffx.22123.1.S1_x_at--301--10572Chr03:26767063..26767087 (25 bp)
TTCTACCTGCTACGCTGTTAGCACA
LOC_Os03g47460
OsAffx.22123.1.S1_x_at--698--9972Chr03:26767066..26767090 (25 bp)
TACCTGCTACGCTGTTAGCACACAA
LOC_Os03g47460
Target Sequence 
ACGTGGCGGGCGAACAACGACGCGGGAGGGACGGCGAATGGCACGGCGATGAGCGCGACGGCCCCGACGACGAACGCGGA
GACGAACGGGCGTTGGCGGCCGGCGACGGGCAACGCGGCGGCGGAGACGGCGGCGACCAGCGGGTCGGGAGGAGGTCGGC
GGGGCGAGGAGGGAGAGGAGAAGGTCCGGCGGTTGACTCGCCCCGCCGCCGCTCCGCTCCGCTGGCAGCGCGCTCGTCTG
CCGCCGCCGGTGCTCCGCTCCGCCGGCCGCCCGCTCTCTACGCGCTCGTCGCTGCAAATACTGGCTCAGCATCGTCCACA
ACAAGAAGAACAGGCTCTTCTACCTGCTACGCTGTTAGCACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22123.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis