Browse Element(s) Details


OsAffx.25605.1.S1_at

Description tigr:9631.m04611
TID=OsAffx.25605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4746011/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein
LOC_Os03g47460OsAffx.25605.1.S1_at11/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.22123.1.S1_x_at5/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.3256.1.S1_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460Os.29856.1.S1_x_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47470OsAffx.25606.1.S1_at11/113+26779676..26781280Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25605.1.S1_at--841--531Chr03:26770372..26770396 (25 bp)
ATCCCCAGCGACATGGGACGGATGG
LOC_Os03g47460
OsAffx.25605.1.S1_at--464--471Chr03:26770604..26770628 (25 bp)
ATCGGACAACTACCCTTCTTGTTTG
LOC_Os03g47460
OsAffx.25605.1.S1_at--102--8151Chr03:26770607..26770631 (25 bp)
GGACAACTACCCTTCTTGTTTGCGC
LOC_Os03g47460
OsAffx.25605.1.S1_at--993--8331Chr03:26770673..26770696 (24 bp)
GGCTGTTCCATCTACATCCACAAGA
LOC_Os03g47460
OsAffx.25605.1.S1_at--1006--9871Chr03:26770685..26770968 (25 bp)
TACATCCACAAGATACACTGAAGAT
LOC_Os03g47460
OsAffx.25605.1.S1_at--804--5351Chr03:26770969..26770993 (25 bp)
GAAGATGATATGATTGGCTTTACTG
LOC_Os03g47460
OsAffx.25605.1.S1_at--139--8293Chr03:26770984..26771008 (25 bp)
GGCTTTACTGGTTTTTACAATGTGG
LOC_Os03g47460
OsAffx.25605.1.S1_at--447--10471Chr03:26770998..26771022 (25 bp)
TTACAATGTGGATATTTTCTTTTCA
LOC_Os03g47460
OsAffx.25605.1.S1_at--646--10311Chr03:26771013..26771037 (25 bp)
TTTCTTTTCACATGATCCCAACAGC
LOC_Os03g47460
OsAffx.25605.1.S1_at--468--3491Chr03:26771023..26771047 (25 bp)
CATGATCCCAACAGCCTTCCTAGGG
LOC_Os03g47460
OsAffx.25605.1.S1_at--188--7611Chr03:26771073..26771097 (25 bp)
GGGCAAAGAACCACATATTATGACA
LOC_Os03g47460
Target Sequence 
ATCCCCAGCGACATGGGACGGATGGTACTGCACGAGTCGCTCGACGGCGCGGGGGGCGCGACCCCGGGAGGGAACGAAGC
AGCAGCATGTCGGGCGGGCGGCTCGACACCAGCGTCGCCAACAACCCAACCGGTGACCGGACCTCGCATGCGCCGCGCTC
TGCGTCGCCGCAGCCGCAGGCCGCAGCGGACGACTGGCTCGCTCGTCTCCCGATCCTGCGTGCTGCTCCCCCATCGGACA
ACTACCCTTCTTGTTTGCGCCCACCGGTGCGCCGCCTGATCACGTCTTCTTCGACCACCTCGGCTGTTCCATCTACATCC
ACAAGATACACTGAAGATGAAGATGATATGATTGGCTTTACTGGTTTTTACAATGTGGATATTTTCTTTTCACATGATCC
CAACAGCCTTCCTAGGGGTTATGAGAAACACAAAAACAAGTTGGGCAAAGAACCACATATTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis