Browse Element(s) Details


OsAffx.25606.1.S1_at

Description tigr:9631.m04612
TID=OsAffx.25606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative MAP kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4747011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein
LOC_Os03g47460OsAffx.25605.1.S1_at11/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.22123.1.S1_x_at5/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.3256.1.S1_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460Os.29856.1.S1_x_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47470OsAffx.25606.1.S1_at11/113+26779676..26781280Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25606.1.S1_at--934--971Chr03:26780715..26780739 (25 bp)
AGGAGAGGTGCAGGGACTCCACCCA
LOC_Os03g47470
OsAffx.25606.1.S1_at--471--2751Chr03:26780819..26780843 (25 bp)
AAGAACCGACGCATCAGCGGCTGGA
LOC_Os03g47470
OsAffx.25606.1.S1_at--664--3551Chr03:26780830..26780854 (25 bp)
CATCAGCGGCTGGAACTTCAACGAG
LOC_Os03g47470
OsAffx.25606.1.S1_at--294--3652Chr03:26780845..26780869 (25 bp)
CTTCAACGAGGAGAGCTTCGAGCTC
LOC_Os03g47470
OsAffx.25606.1.S1_at--559--6171Chr03:26780852..26780876 (25 bp)
GAGGAGAGCTTCGAGCTCGACCCCA
LOC_Os03g47470
OsAffx.25606.1.S1_at--1025--5651Chr03:26780942..26780966 (25 bp)
GACATGGTCGAGCACGAGCAAGAAC
LOC_Os03g47470
OsAffx.25606.1.S1_at--282--931Chr03:26780975..26780999 (25 bp)
AGGCAGGATGGCAACGATGGCTCAA
LOC_Os03g47470
OsAffx.25606.1.S1_at--875--6231Chr03:26780981..26781005 (25 bp)
GATGGCAACGATGGCTCAAGCGACG
LOC_Os03g47470
OsAffx.25606.1.S1_at--1110--4331Chr03:26781195..26781219 (25 bp)
CCAGGAACGCGCATCTGCAGGAGCT
LOC_Os03g47470
OsAffx.25606.1.S1_at--796--471Chr03:26781207..26781231 (25 bp)
ATCTGCAGGAGCTTCTCCACGAGAG
LOC_Os03g47470
OsAffx.25606.1.S1_at--903--1551Chr03:26781216..26781240 (25 bp)
AGCTTCTCCACGAGAGGGCTTGTGA
LOC_Os03g47470
Target Sequence 
AGGAGAGGTGCAGGGACTCCACCCAGCTCTGCGGCTGCGCCCGCGGCGCGCGCTGCGTCTCCCCGTGCCGCCACGCCAGC
AGCGGCAGCAACGTCGTCGCCGCCAAGAACCGACGCATCAGCGGCTGGAACTTCAACGAGGAGAGCTTCGAGCTCGACCC
CACCGACAAGCCACCGGAGCAGCAGCAGCAGCAGCCATGCTTCCCCTTCCACCACGACAACGACGACGACATGGTCGAGC
ACGAGCAAGAACAGCGGCGGAGGCAGGATGGCAACGATGGCTCAAGCGACGTGGCGGTTCCCCACCTGGTGACCATCTTG
GGGAGCTTGGAGATGCAGAGGGACATGGTGATGCAGGTGCTAGAAGGCGATGGCGGAGGCGGCGGCGAGACGGCGGGGAG
GGAGGAGATGCTGGTTGGGTACGTGAGGGAGCTGGAGAAGAGGGTGCAGGAGCTGAGCACGGAGGTGGAGGAGGAGATGG
CCAGGAACGCGCATCTGCAGGAGCTTCTCCACGAGAGGGCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis