Browse Element(s) Details


OsAffx.3256.1.S1_at

Description gb:AK111378.1
DB_XREF= gi:32996587
TID=OsAffx.3256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B03, full insert sequence.
FL= gb:AK111378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474601/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein
LOC_Os03g47460OsAffx.25605.1.S1_at11/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.22123.1.S1_x_at5/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460OsAffx.3256.1.S1_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47460Os.29856.1.S1_x_at1/113+26766619..26771208Ribosome inactivating protein, expressed
LOC_Os03g47470OsAffx.25606.1.S1_at11/113+26779676..26781280Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3256.1.S1_at--154--1051NONE
GATGGTTCAACCCTTAAGTTAGCGC
NONE
OsAffx.3256.1.S1_at--769--9771NONE
TAAGTTAGCGCTTATGGGAACCCTT
NONE
OsAffx.3256.1.S1_at--895--4511Chr03:9457761..9457785 (25 bp)
GCCGACAGCTACCTTCTGGTTTCCA
NONE
OsAffx.3256.1.S1_at--693--2611Chr03:9457706..9457730 (25 bp)
AACCACGTCGACTGTTCCATCTAGA
NONE
OsAffx.3256.1.S1_at--630--5711Chr03:9457697..9457721 (25 bp)
GACTGTTCCATCTAGATCCACATTG
NONE
OsAffx.3256.1.S1_at--238--10052Chr04:11436659..11436679 (21 bp)
TAGATCCACATTGTACAGTACTATA
NONE
OsAffx.3256.1.S1_at--425--6851Chr03:9457610..9457634 (25 bp)
GTTTGACTTCAGATTCTGGTAGTTC
NONE
OsAffx.3256.1.S1_at--298--6571Chr03:9457599..9457623 (25 bp)
GATTCTGGTAGTTCGATTCCTTTAT
NONE
OsAffx.3256.1.S1_at--917--3152Chr04:11436550..11436574 (25 bp)
AATTCGGAAGGATTGCAGCAAGCAC
NONE
OsAffx.3256.1.S1_at--40--10431Chr03:9457542..9457566 (25 bp)
TTATTTGTATTGTTTCACTTCAGAC
NONE
OsAffx.3256.1.S1_at--737--5712Chr03:26770852..26770876 (25 bp)
GACTCTGTTAGTTTAAATTCTCAAG
LOC_Os03g47460
Target Sequence 
GATGGTTCAACCCTTAAGTTAGCGCTTATGGGAACCCTTCCCCGCGGCCGCCACGGATGGTACTGCACGACTCGCTCGGC
GGCGCGGGGTTCTCCACCGTGCACGCCGGGGTGGCCCGACCGGGAGAGAACAAAGCAGCATGTCGGGTAGCTCACGCGGC
GGGGCATGACACCAGCATCGCCATCAACCGGTGAGCGGACCTCGCACCCGCCGCGTTCTGCGTCGCCGCAGCCGATGACT
AGCTTGCTCGTCTCCCAAATTCCCAATCCTGCGCCGCACCCCATCGAAGCCATCGTCGCGCCCCTCGACGACCTCTCCAC
CTGCTTCCTCGCCGACAGCTACCTTCTGGTTTCCACCCACCGATGCGCCGCCTGAGGTCTTCTTCAACCACGTCGACTGT
TCCATCTAGATCCACATTGTACAGTACTATATATAAGCACGATTAAGAACATTTGCAACAAGCACATATACTATTTTTAT
AGTTTGACTTCAGATTCTGGTAGTTCGATTCCTTTATTAAATTCGGAAGGATTGCAGCAAGCACATATATTATTTGTATT
GTTTCACTTCAGACTCTGTTAGTTTAAATTCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis