Browse Element(s) Details


OsAffx.13387.1.S1_at

Description tigr:9631.m04601
TID=OsAffx.13387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47350NANA3+26731889..26732284hypothetical protein
LOC_Os03g47360OsAffx.13387.1.S1_at11/113+26734075..26737852hypothetical protein
LOC_Os03g47360OsAffx.13387.3.S1_x_at1/113+26734075..26737852hypothetical protein
LOC_Os03g47370OsAffx.25600.1.S1_at11/113+26739077..26740433expressed protein
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13387.1.S1_at--122--672Chr03:24111097..24111118 (22 bp)
ATGAATATGAGAGTGTCTGGTACAA
NONE
OsAffx.13387.1.S1_at--157--7171Chr03:26736837..26736861 (25 bp)
GTCTGGTACAAAAATCACTGCGAAG
LOC_Os03g47360
OsAffx.13387.1.S1_at--1071--2251Chr03:26736826..26736850 (25 bp)
AAATCACTGCGAAGATATCAAGAAA
LOC_Os03g47360
OsAffx.13387.1.S1_at--755--6312Chr03:24111186..24111210 (25 bp)
GATGACATTCTTGACACTGCAAATC
NONE
OsAffx.13387.1.S1_at--832--9571Chr03:26736748..26736772 (25 bp)
TCTTGACACTGCAAATCCAAACGAA
LOC_Os03g47360
OsAffx.13387.1.S1_at--818--5251Chr03:26736720..26736744 (25 bp)
GAATGCCATGGATATCTTTCAATTT
LOC_Os03g47360
OsAffx.13387.1.S1_at--387--9592Chr03:24111317..24111341 (25 bp)
TCATTTTAATAGCTCGAAAGTTCAA
NONE
OsAffx.13387.1.S1_at--308--1251Chr03:26734141..26734165 (25 bp)
AGATAATGAGCATCGACTACGTGTT
LOC_Os03g47360
OsAffx.13387.1.S1_at--1049--511Chr03:26734130..26734154 (25 bp)
ATCGACTACGTGTTTCGTTCCTCAA
LOC_Os03g47360
OsAffx.13387.1.S1_at--759--7411Chr03:26734121..26734145 (25 bp)
GTGTTTCGTTCCTCAACAAGTCATG
LOC_Os03g47360
OsAffx.13387.1.S1_at--264--3751Chr03:26734110..26734134 (25 bp)
CTCAACAAGTCATGTGGTCAGATGA
LOC_Os03g47360
Target Sequence 
ATGAATATGAGAGTGTCTGGTACAAAAATCACTGCGAAGATATCAAGAAATATGTGGTAGTACGAGTAAATAATTTTGAG
TGGGACTCCGACAACGATGACATTCTTGACACTGCAAATCCAAACGAAGGAGAATGCCATGGATATCTTTCAATTTTGGG
ATTCCATCCTTATAAAGAAGTTATTTTTCTGAACCAAAAGAGGGAAAGAGGACTTGCCTATCATTTTAATAGCTCGAAAG
TTCAAAATTTAGGTAATAATAAGTTCCAAGTAATTAAGTTACCCATGAATAATGAAGTATCTCCATATAAAAACTATTTT
CTTGGGAGATCAATGAGGGGTGTGCACTATGCATTAATAGATAATGAGCATCGACTACGTGTTTCGTTCCTCAACAAGTC
ATGTGGTCAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis