Browse Element(s) Details


OsAffx.25600.1.S1_at

Description tigr:9631.m04602
TID=OsAffx.25600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4737011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47350NANA3+26731889..26732284hypothetical protein
LOC_Os03g47360OsAffx.13387.1.S1_at11/113+26734075..26737852hypothetical protein
LOC_Os03g47360OsAffx.13387.3.S1_x_at1/113+26734075..26737852hypothetical protein
LOC_Os03g47370OsAffx.25600.1.S1_at11/113+26739077..26740433expressed protein
LOC_Os03g47380OsAffx.13388.1.S1_at11/113+26743502..26744741hypothetical protein
LOC_Os03g47390OsAffx.25601.1.S1_at11/113+26747562..26747843hypothetical protein
LOC_Os03g47410OsAffx.20369.1.S1_at6/113+26751235..26755518retrotransposon protein, putative, unclassified
LOC_Os03g47420OsAffx.25603.1.S1_at11/113+26758163..26759705F-box domain containing protein
LOC_Os03g47430OsAffx.13389.1.S1_at9/113+26761530..26761892hypothetical protein
LOC_Os03g47440OsAffx.25604.1.S1_at7/113+26764861..26765689hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25600.1.S1_at--40--6011Chr03:26739112..26739136 (25 bp)
GAGAGTCGTTCTGGCTTCGTTACAC
LOC_Os03g47370
OsAffx.25600.1.S1_at--923--991Chr03:26739890..26739914 (25 bp)
AGGATGAGCAGCCAAATCTTCCGCC
LOC_Os03g47370
OsAffx.25600.1.S1_at--364--3811Chr03:26739914..26739938 (25 bp)
CTCCGGCTGGAAATGGCGTTGGCAC
LOC_Os03g47370
OsAffx.25600.1.S1_at--143--2571Chr03:26739991..26740015 (25 bp)
AACTGGGATCGGTACATTATGGCAA
LOC_Os03g47370
OsAffx.25600.1.S1_at--129--8051Chr03:26740033..26740057 (25 bp)
GGAGTTCAGATCATTTACGCGCTTT
LOC_Os03g47370
OsAffx.25600.1.S1_at--215--4071Chr03:26740060..26740175 (25 bp)
CGAGAGATACTGTTGCCTGATGCAT
LOC_Os03g47370
OsAffx.25600.1.S1_at--159--6831Chr03:26740214..26740238 (25 bp)
GTTTATGTATCTTGGATCCCTGGAT
LOC_Os03g47370
OsAffx.25600.1.S1_at--502--4271Chr03:26740232..26740255 (24 bp)
CCTGGATCCCTGAACTTGAATCTGA
LOC_Os03g47370
OsAffx.25600.1.S1_at--472--9011Chr03:26740248..26740354 (25 bp)
TGAATCTGATGGCACCACCTTACAT
LOC_Os03g47370
OsAffx.25600.1.S1_at--359--1731Chr03:26740346..26740370 (25 bp)
ACCTTACATCTTTGCAGTACTCAGC
LOC_Os03g47370
OsAffx.25600.1.S1_at--774--9891Chr03:26740363..26740387 (25 bp)
TACTCAGCTGTCCACACAAACGATT
LOC_Os03g47370
Target Sequence 
GAGAGTCGTTCTGGCTTCGTTACACGAAACAGAGGATGAGCAGCCAAATCTTCCGCCTCCGGCTGGAAATGGCGTTGGCA
CAGCCACAGTGAAGCAGCCTAAGATGATACTTGATCCCGGGGACAACTTCAGCAACTGGGATCGGTACATTATGGCAATC
TTGGAGGTGGCGACTGGAGTTCAGATCATTTACGCGCTTTTTCGAGAGATACTGTTGCCTGATGCATCTGAGTTAATCGT
AGGTAGCAGCTACATATGTATCCCTGTTTATGTATCTTGGATCCCTGGATCCCTGAACTTGAATCTGATGGCACCACCTT
ACATCTTTGCAGTACTCAGCTGTCCACACAAACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis