Browse Element(s) Details


Os.55827.1.S1_at

Description gb:AK108860.1
DB_XREF= gi:32994069
TID=Os.55827.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B08, full insert sequence.
FL= gb:AK108860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2987011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29850OsAffx.19074.1.S1_x_at11/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29850Os.25312.1.S1_at9/1111+16827052..16830081ABC transporter family protein, expressed
LOC_Os11g29860OsAffx.31211.1.S1_at10/1111+16834181..16835092hypothetical protein
LOC_Os11g29870Os.55827.1.S1_at11/1111+16849519..16853091WRKY DNA binding domain containing protein, expressed
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29890NANA11+16860802..16864298hypothetical protein
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55827.1.S1_at--330--10651Chr11:16852714..16852738 (25 bp)
TTCCCACATGTTCCAGTAGCTTTAG
LOC_Os11g29870
Os.55827.1.S1_at--640--6771Chr11:16852765..16852789 (25 bp)
GTTACACGTACATATATGATCAATG
LOC_Os11g29870
Os.55827.1.S1_at--898--711Chr11:16852780..16852804 (25 bp)
ATGATCAATGCCAATGCCACACTGT
LOC_Os11g29870
Os.55827.1.S1_at--390--591Chr11:16852787..16852811 (25 bp)
ATGCCAATGCCACACTGTACATATG
LOC_Os11g29870
Os.55827.1.S1_at--490--9391Chr11:16852939..16852963 (25 bp)
TCGATCGAGATTCAGTGGCAAGCAA
LOC_Os11g29870
Os.55827.1.S1_at--507--8231Chr11:16852955..16852979 (25 bp)
GGCAAGCAAGATTCGGTCACGCATG
LOC_Os11g29870
Os.55827.1.S1_at--5--7111Chr11:16852970..16852994 (25 bp)
GTCACGCATGCAGTTCTTTTTAATT
LOC_Os11g29870
Os.55827.1.S1_at--320--10371Chr11:16853004..16853028 (25 bp)
TTTTTTGTCAACTGTAGGCCAGATG
LOC_Os11g29870
Os.55827.1.S1_at--35--8451Chr11:16853020..16853044 (25 bp)
GGCCAGATGTACTAGTGATTGCACA
LOC_Os11g29870
Os.55827.1.S1_at--408--7411Chr11:16853034..16853058 (25 bp)
GTGATTGCACAACTTTTACAAAGAA
LOC_Os11g29870
Os.55827.1.S1_at--885--5591Chr11:16853056..16853080 (25 bp)
GAAATTTATTCACAAGATCTTGCAC
LOC_Os11g29870
Target Sequence 
TTCCCACATGTTCCAGTAGCTTTAGCAAATTTGATCATACACAACAAATTAGTTACACGTACATATATGATCAATGCCAA
TGCCACACTGTACATATGCAGTGCATGCATGGATCGATGGATGTTAGCAGGAAAAATTAAGAGGCTATGTTAATTTGTAC
ATTAAACTTAGATGAGGTGCAGTGTAAGAGAAAACTAGCTAGTGAATTAATAAGCATATGCATGATCGATCGAGATTCAG
TGGCAAGCAAGATTCGGTCACGCATGCAGTTCTTTTTAATTGTTTTACTTTTTTTTGTCAACTGTAGGCCAGATGTACTA
GTGATTGCACAACTTTTACAAAGAAATTTATTCACAAGATCTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis