Browse Element(s) Details


Os.55837.1.S1_x_at

Description gb:AK108873.1
DB_XREF= gi:32994082
TID=Os.55837.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C11, full insert sequence.
FL= gb:AK108873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1037011/11AP2 domain containing protein, expressed
LOC_Os05g407201/11Glycosyl transferase family 8 protein
LOC_Os04g262801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0016051biological_processcarbohydrate biosynthesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55837.1.S1_x_at--3--3351Chr01:5451929..5451953 (25 bp)
CACGAGCCGCAGCAGCCTGAGTCGA
LOC_Os01g10370
Os.55837.1.S1_x_at--213--6071Chr01:5451794..5451818 (25 bp)
GAGTTCGGGACGTCGGATCATTGCT
LOC_Os01g10370
Os.55837.1.S1_x_at--10--1911Chr01:5451785..5451809 (25 bp)
ACGTCGGATCATTGCTGGACGGCGT
LOC_Os01g10370
Os.55837.1.S1_x_at--52--8531Chr01:5451770..5451794 (25 bp)
TGGACGGCGTACGATGCGCTTGACC
LOC_Os01g10370
Os.55837.1.S1_x_at--701--3371Chr01:5451734..5451758 (25 bp)
CAGCCTCTCCTCTGGGAGTACTAGG
LOC_Os01g10370
Os.55837.1.S1_x_at--234--8031Chr01:5451720..5451744 (25 bp)
GGAGTACTAGGCTGCTGCTTGTAAA
LOC_Os01g10370
Os.55837.1.S1_x_at--555--9831Chr01:5451699..5451723 (25 bp)
TAAAACAGCTTCCTCTTCTTTTCTT
LOC_Os01g10370
Os.55837.1.S1_x_at--686--10831Chr01:5451648..5451672 (25 bp)
TTGTGTGGATTTTTTCCCCTAGTGC
LOC_Os01g10370
Os.55837.1.S1_x_at--469--7311Chr01:5451627..5451651 (25 bp)
GTGCTGCTTAAAATGTGGCTTGTTT
LOC_Os01g10370
Os.55837.1.S1_x_at--194--10393Chr05:23791436..23791526 (25 bp)
TTTTCTTCTCTCTTTCAATCTTGAT
LOC_Os05g40720
Os.55837.1.S1_x_at--266--9592Chr07:14791858..14791886 (23 bp)
TCTTGATTTGAGTTGGATTTGGAGT
NONE
Target Sequence 
CACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGCGCAGATGGC
GGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTCGGATCATTGCT
GGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAGGCTGCTGCTTGTAAAACAGCT
TCCTCTTCTTTTCTTTTCTTTTCTTTTTTTGGTTTTGTTTTTTGTGTGGATTTTTTCCCCTAGTGCTGCTTAAAATGTGG
CTTGTTTTTTTTCTTCTCTCTTTCAATCTTGATTTGAGTTGGATTTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55837.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis