Browse Element(s) Details


Os.5590.1.S1_at

Description gb:AK067315.1
DB_XREF= gi:32977333
TID=Os.5590.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105L15, full insert sequence.
FL= gb:AK067315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1175011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11720NANA2+6038439..6039470hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g11730Os.35344.18.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730Os.35344.3.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730OsAffx.22940.5.S1_x_at3/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5590.1.S1_at--516--1471Chr02:6065333..6065357 (25 bp)
AGCAATTCAAATGCGCGAGGACCTT
LOC_Os02g11750
Os.5590.1.S1_at--255--7171Chr02:6065910..6065934 (25 bp)
GTCTGCTGCACGGAAAGTTTCTTCA
LOC_Os02g11750
Os.5590.1.S1_at--790--731Chr02:6066070..6066094 (25 bp)
ATGTTTTCTGCAACTTCAAGACTAC
LOC_Os02g11750
Os.5590.1.S1_at--204--5911Chr02:6066122..6066363 (25 bp)
GAGCTCCAGTCTCTTATTGACGATG
LOC_Os02g11750
Os.5590.1.S1_at--265--411Chr02:6066473..6066497 (25 bp)
ATCATGGTGCTAACTTTCCTAGAAG
LOC_Os02g11750
Os.5590.1.S1_at--799--8151Chr02:6066549..6066573 (25 bp)
GGAAACCATGTATTAGTCTGCAGAT
LOC_Os02g11750
Os.5590.1.S1_at--831--10071Chr02:6066578..6066602 (25 bp)
TAGTGTGAACTTTTGTCGGTGTAGA
LOC_Os02g11750
Os.5590.1.S1_at--876--131Chr02:6066602..6066626 (25 bp)
ATTATTAGCCCGAGGAATTCTTGCC
LOC_Os02g11750
Os.5590.1.S1_at--866--931Chr02:6066614..6066638 (25 bp)
AGGAATTCTTGCCTGACTTTGACAA
LOC_Os02g11750
Os.5590.1.S1_at--1093--2971Chr02:6066644..6066668 (25 bp)
AATGTGTATGCTGTCCGTACCATGC
LOC_Os02g11750
Os.5590.1.S1_at--1049--6971Chr02:6066660..6066684 (25 bp)
GTACCATGCCAACTCGAGCAGTTAT
LOC_Os02g11750
Target Sequence 
AGCAATTCAAATGCGCGAGGACCTTGAAANTGAGGTTAGTCAGATCAAAGATAAAGTTGCAGCAAAGGAACAACACATTG
CAGATTTGCAAAAGAGATCCCAGAAGTTAGAGGATGAATTGTCTGCTGCACGGAAAGTTTCTTCAGAACGACAATTGGTT
GTTACAAAGCTGTACAAATGTTTTCTGCAACTTCAAGACTACAATGACAGGGTGAAGATGTCTGAAAAGGAGCTCCAGTC
TCTTATTGACGATGCAATGGGTGAGGTTGACATTGGTGAAGAAGCCACAACCAAAGATGGTTCAATGTATGAGAATGGCG
TAGCATGAAAATCTGCACATCACAAAACCGGTATTATTAGTTTATCATGGTGCTAACTTTCCTAGAAGTACAATATACCA
TGAAGAACTGTAACAAGTGATTCATGNAAGTGAAGGCTAGGAAACCATGTATTAGTCTGCAGATTGTTTAGTGTGAACTT
TTGTCGGTGTAGATTATTAGCCCGAGGAATTCTTGCCTGACTTTGACAAGTGATAATGTGTATGCTGTCCGTACCATGCC
AACTCGAGCAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis