Browse Element(s) Details


Os.55984.1.S1_at

Description gb:AK109087.1
DB_XREF= gi:32994296
TID=Os.55984.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H11, full insert sequence.
FL= gb:AK109087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4684011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g46820OsAffx.15131.1.S1_at11/115+27034055..27035050hypothetical protein
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative
LOC_Os05g46874OsAffx.4644.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46874OsAffx.27347.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55984.1.S1_at--240--871Chr05:27039334..27039358 (25 bp)
ATGGCCGGTTTGCTACTCCGCGTGA
LOC_Os05g46840
Os.55984.1.S1_at--147--4091Chr05:27039372..27039396 (25 bp)
CGAATACATGGTCGGCGAACTCGGA
LOC_Os05g46840
Os.55984.1.S1_at--322--5871Chr05:27039395..27039419 (25 bp)
GAGCCTGATATCCATCGAGACCGAG
LOC_Os05g46840
Os.55984.1.S1_at--947--6031Chr05:27039432..27039456 (25 bp)
GAGATCCGAGAATTATACGTATATT
LOC_Os05g46840
Os.55984.1.S1_at--888--231Chr05:27039452..27039476 (25 bp)
ATATTTGATTTGTACGCATGCTGAA
LOC_Os05g46840
Os.55984.1.S1_at--53--5471Chr05:27039477..27039501 (25 bp)
GAAAGGCAAGTACTTACGTATTAAT
LOC_Os05g46840
Os.55984.1.S1_at--8--1831Chr05:27039504..27039528 (25 bp)
ACGTATACCAACTGTATAGTCGTAT
LOC_Os05g46840
Os.55984.1.S1_at--529--271Chr05:27039519..27039543 (25 bp)
ATAGTCGTATACTCGTATGTATGTA
LOC_Os05g46840
Os.55984.1.S1_at--491--7431Chr05:27039568..27039592 (25 bp)
GTGTACAGTTGTAAGCCTAGCTAAG
LOC_Os05g46840
Os.55984.1.S1_at--885--1311Chr05:27039591..27039615 (25 bp)
AGAGGCTAGCTGAGTAAACGAGATC
LOC_Os05g46840
Os.55984.1.S1_at--578--9831Chr05:27039605..27039629 (25 bp)
TAAACGAGATCAGACAGTTGCATGC
LOC_Os05g46840
Target Sequence 
ATGGCCGGTTTGCTACTCCGCGTGATCCGCGACGCCGTCGAATACATGGTCGGCGAACTCGGAGCCTGATATCCATCGAG
ACCGAGAAGAAGATACGAGAGATCCGAGAATTATACGTATATTTGATTTGTACGCATGCTGAAGAAAGGCAAGTACTTAC
GTATTAATTAACGTATACCAACTGTATAGTCGTATACTCGTATGTATGTATTATTGTATTTGTATTAGTATACAGTGTAC
AGTTGTAAGCCTAGCTAAGAGGCTAGCTGAGTAAACGAGATCAGACAGTTGCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis