Browse Element(s) Details


Os.56014.1.S1_at

Description gb:AK109126.1
DB_XREF= gi:32994335
TID=Os.56014.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D05, full insert sequence.
FL= gb:AK109126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4019011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56014.1.S1_at--346--6971Chr01:23005425..23005449 (25 bp)
GTAGCGACGTGAGGTGTGGCACTGA
LOC_Os01g40190
Os.56014.1.S1_at--892--9991Chr01:23005426..23005450 (25 bp)
TAGCGACGTGAGGTGTGGCACTGAC
LOC_Os01g40190
Os.56014.1.S1_at--964--4071Chr01:23005429..23005453 (25 bp)
CGACGTGAGGTGTGGCACTGACCCT
LOC_Os01g40190
Os.56014.1.S1_at--1063--5751Chr01:23005430..23005454 (25 bp)
GACGTGAGGTGTGGCACTGACCCTG
LOC_Os01g40190
Os.56014.1.S1_at--577--1911Chr01:23005431..23005455 (25 bp)
ACGTGAGGTGTGGCACTGACCCTGA
LOC_Os01g40190
Os.56014.1.S1_at--310--7391Chr01:23005433..23005457 (25 bp)
GTGAGGTGTGGCACTGACCCTGAAA
LOC_Os01g40190
Os.56014.1.S1_at--460--8891Chr01:23005434..23005458 (25 bp)
TGAGGTGTGGCACTGACCCTGAAAA
LOC_Os01g40190
Os.56014.1.S1_at--384--6131Chr01:23005435..23005459 (25 bp)
GAGGTGTGGCACTGACCCTGAAAAA
LOC_Os01g40190
Os.56014.1.S1_at--478--1051Chr01:23005436..23005460 (25 bp)
AGGTGTGGCACTGACCCTGAAAAAA
LOC_Os01g40190
Os.56014.1.S1_at--925--7731Chr01:23005437..23005461 (25 bp)
GGTGTGGCACTGACCCTGAAAAAAA
LOC_Os01g40190
Os.56014.1.S1_at--841--7471Chr01:23005438..23005462 (25 bp)
GTGTGGCACTGACCCTGAAAAAAAA
LOC_Os01g40190
Target Sequence 
GTAGCGACGTGAGGTGTGGCACTGACCCTGAAAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis