Browse Element(s) Details

Os.56071.1.S1_at

Description

gb:AK109209.1
DB_XREF= gi:32994418
TID=Os.56071.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-C12, full insert sequence.
FL= gb:AK109209.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08390	8/11	Ser/Thr protein phosphatase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08360	NA	NA	6	+	4061445..4062329	UPF0326 protein hag1, putative, expressed
LOC_Os06g08370	OsAffx.23250.2.S1_x_at	3/11	6	+	4063784..4064226	hypothetical protein
LOC_Os06g08380	OsAffx.27509.1.S1_at	11/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380	OsAffx.27509.1.S2_s_at	11/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380	OsAffx.27509.1.S2_at	9/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08390	Os.52681.1.S1_at	11/11	6	+	4086967..4091107	Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08390	Os.56071.1.S1_at	8/11	6	+	4086967..4091107	Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08400	Os.15350.1.S1_x_at	11/11	6	+	4092232..4099891	LIM domain-containing protein, putative, expressed
LOC_Os06g08400	Os.21811.1.S1_at	1/11	6	+	4092232..4099891	LIM domain-containing protein, putative, expressed
LOC_Os06g08410	Os.47463.1.S1_x_at	5/11	6	+	4105714..4111037	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08410	Os.14491.2.S1_x_at	5/11	6	+	4105714..4111037	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08420	NA	NA	6	+	4112423..4115755	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.56071.1.S1_at--493--275	1	Chr06:4086938..4086962 (25 bp)	AAGAAATGGTGAGGCCCGCACTGCT	NONE
Os.56071.1.S1_at--444--775	1	Chr06:4086945..4086969 (25 bp)	GGTGAGGCCCGCACTGCTACGGTCT	NONE
Os.56071.1.S1_at--734--887	1	Chr06:4086947..4086971 (25 bp)	TGAGGCCCGCACTGCTACGGTCTCG	NONE
Os.56071.1.S1_at--1092--401	1	Chr06:4087197..4087221 (25 bp)	CGTCTCTTCTTTGCGGCGTGCCTGG	LOC_Os06g08390
Os.56071.1.S1_at--960--27	1	Chr06:4087230..4087254 (25 bp)	ATAGGCCAGACATGGGTGCTGGTGT	LOC_Os06g08390
Os.56071.1.S1_at--128--391	1	Chr06:4087248..4087272 (25 bp)	CTGGTGTGGCCTTGCGATTCTCGGT	LOC_Os06g08390
Os.56071.1.S1_at--1063--843	1	Chr06:4087254..4087278 (25 bp)	TGGCCTTGCGATTCTCGGTGGGTTT	LOC_Os06g08390
Os.56071.1.S1_at--943--1069	1	Chr06:4087259..4087283 (25 bp)	TTGCGATTCTCGGTGGGTTTCGTGT	LOC_Os06g08390
Os.56071.1.S1_at--19--749	1	Chr06:4087271..4087295 (25 bp)	GTGGGTTTCGTGTGGCGTAGCATAG	LOC_Os06g08390
Os.56071.1.S1_at--1072--761	1	Chr06:4087326..4087350 (25 bp)	GGGACGGAAGCATTCTACCAATTCC	LOC_Os06g08390
Os.56071.1.S1_at--419--193	1	Chr06:4087329..4087353 (25 bp)	ACGGAAGCATTCTACCAATTCCCGC	LOC_Os06g08390

Target Sequence

AAGAAATGGTGAGGCCCGCACTGCTACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCT
GCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAG
GCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGGTAACCC
CCTCCTTGCCCTCTTCCTCCGTCTCTTCTTTGCGGCGTGCCTGGGATGGGGGATAGGCCAGACATGGGTGCTGGTGTGGC
CTTGCGATTCTCGGTGGGTTTCGTGTGGCGTAGCATAGGGGATTCGGAGTGAGAGGGAGATGGCTTTGGGGACGGAAGCA
TTCTACCAATTCCCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis