Browse Element(s) Details


Os.56077.1.S1_x_at

Description gb:AK109223.1
DB_XREF= gi:32994432
TID=Os.56077.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E07, full insert sequence.
FL= gb:AK109223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1676011/11expressed protein
LOC_Os01g361001/11hypothetical protein
LOC_Os01g242941/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g166701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g213101/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16720OsAffx.17747.1.S1_at10/119+10228039..10228354hypothetical protein
LOC_Os09g16729Os.37916.1.S1_at3/119+10232559..10233300NA
LOC_Os09g16740NANA9+10240972..10244215hypothetical protein
LOC_Os09g16750NANA9+10245898..10246495retrotransposon protein, putative, unclassified
LOC_Os09g16760Os.56077.1.S1_x_at11/119+10251138..10253760expressed protein
LOC_Os09g16760Os.53655.1.A1_at10/119+10251138..10253760expressed protein
LOC_Os09g16770NANA9+10255260..10256571transposon protein, putative, unclassified
LOC_Os09g16780Os.38113.1.S2_at3/119+10259561..10261220hypothetical protein
LOC_Os09g16790NANA9+10262361..10265405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16800OsAffx.17748.1.S1_at11/119+10269182..10269600hypothetical protein
LOC_Os09g16810OsAffx.29877.1.S1_at11/119+10271653..10272957F-box domain containing protein
LOC_Os09g16820OsAffx.29130.2.S1_x_at11/119+10274870..10275205hypothetical protein
LOC_Os09g16830NANA9+10277418..10279355retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56077.1.S1_x_at--750--6911Chr09:10251261..10251285 (25 bp)
GTAGGCGTGGCGGTGGCTGGCAACG
LOC_Os09g16760
Os.56077.1.S1_x_at--271--3991Chr09:10251542..10251566 (25 bp)
CGGGCGGCGGTCCAGCGAAGGCGGT
LOC_Os09g16760
Os.56077.1.S1_x_at--664--4351Chr09:10251571..10251595 (25 bp)
CCAGCGGCGCCCGATGGATTTGTTG
LOC_Os09g16760
Os.56077.1.S1_x_at--1144--8811Chr09:10251591..10251615 (25 bp)
TGTTGGATGATTTTATAGTTCTTTT
LOC_Os09g16760
Os.56077.1.S1_x_at--685--5232Chr11:5933510..5933564 (25 bp)
GAATATGTTTCATCTGTGATCTGTG
NONE
Os.56077.1.S1_x_at--597--96130Chr12:17317625..17317812 (25 bp)
TCATCTGTGATCTGTGATATGTGAT
NONE
Os.56077.1.S1_x_at--186--6512Chr09:10251675..10251699 (25 bp)
GATATGTGATTTGTGATTCGTGATT
LOC_Os09g16760
Os.56077.1.S1_x_at--972--8932Chr09:10251724..10251748 (25 bp)
TGACGATGATTGTGAGTTCCGGCTC
LOC_Os09g16760
Os.56077.1.S1_x_at--993--713Chr09:10251729..10251753 (25 bp)
ATGATTGTGAGTTCCGGCTCGATTC
LOC_Os09g16760
Os.56077.1.S1_x_at--1156--8591Chr09:10251734..10251758 (25 bp)
TGTGAGTTCCGGCTCGATTCGAGTC
LOC_Os09g16760
Os.56077.1.S1_x_at--1116--4792Chr09:10251745..10251769 (25 bp)
GCTCGATTCGAGTCGGCTCTTTTTT
LOC_Os09g16760
Target Sequence 
GTAGGCGTGGCGGTGGCTGGCAACGGCGCGCCCTCCCCTCCGCCGGATCTAGCTGGAGGGGAGGTGGTGGACCTTGGGGA
CGGCCGGGCGGTGGTCCGGTGGAGGCGGTTGCGGCGGCCGCGCCCTCCCCTCCGCCAAATCCGGCCGGAGAGGAGGCAGC
GGACCTCGGCGGAGGCGGCACAGCGGCTGGCGGCGGACCTCGGCGGAGGCGGCTGGCGGCGGCCGTGCCCTCCCCTCCGC
TAGATCTGGACGGAGGGGAGGTGGTGGACGTCGGGGACGGTCGGGCGGCGGTCCAGCGAAGGCGGTGGCGCCAGCGGCGC
CCGATGGATTTGTTGGATGATTTTATAGTTCTTTTAGATTTTTTTGTGATTTGTGGATGATTTTATTTCTGAATATGTTT
CATCTGTGATCTGTGATATGTGATTTGTGATTCGTGATTTGTGGGGGTTTGGGGATGGAGTAGTGACGATGATTGTGAGT
TCCGGCTCGATTCGAGTCGGCTCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56077.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis