Browse Element(s) Details


Os.56146.1.S1_at

Description gb:AK109408.2
DB_XREF= gi:42821722
TID=Os.56146.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence.
FL= gb:AK109408.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4212010/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42060Os.6046.1.S1_at11/116+25268139..25269606expressed protein
LOC_Os06g42060Os.6046.1.S2_at11/116+25268139..25269606expressed protein
LOC_Os06g42070OsAffx.28060.1.S1_at10/116+25270747..25272847hypothetical protein
LOC_Os06g42080NANA6+25277370..25279203retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g42090NANA6+25279478..25282985transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42100NANA6+25288296..25289486hypothetical protein
LOC_Os06g42110OsAffx.28061.1.S1_at11/116+25290574..25291059hypothetical protein
LOC_Os06g42120Os.56146.1.S1_at10/116+25291063..25292336Sulfotransferase domain containing protein, expressed
LOC_Os06g42130Os.2688.1.S1_at3/116+25295198..25296319Leucoanthocyanidin dioxygenase, putative
LOC_Os06g42140NANA6+25303129..25303344bZIP transcription factor ATB2, putative
LOC_Os06g42150OsAffx.28062.1.S1_at11/116+25304348..25304641hypothetical protein
LOC_Os06g42160OsAffx.3280.1.S1_x_at1/116+25310355..25311314retrotransposon protein, putative, unclassified
LOC_Os06g42170OsAffx.411.1.S1_at1/116+25316612..25317078retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56146.1.S1_at--582--4071Chr06:25291546..25291570 (25 bp)
CGAGCGGGTGCTCTTCCTCAGGTAC
LOC_Os06g42120
Os.56146.1.S1_at--565--4731Chr06:25291411..25291435 (25 bp)
GCTGTGCTCGTTCGACAACATGGTC
LOC_Os06g42120
Os.56146.1.S1_at--631--2891NONE
AAGGGTGGCCGCACGTAGCTCACAA
NONE
Os.56146.1.S1_at--850--8691Chr06:25291283..25291307 (25 bp)
TGTCTCCGGAGATGGCGCAACGAAT
LOC_Os06g42120
Os.56146.1.S1_at--347--5811Chr06:25291257..25291281 (25 bp)
GACGCCATCACCGAGGCTAAGTTTG
LOC_Os06g42120
Os.56146.1.S1_at--8--2831Chr06:25291239..25291263 (25 bp)
AAGTTTGCAGGTTTTGGCCTAGCGC
LOC_Os06g42120
Os.56146.1.S1_at--1031--4171Chr06:25291215..25291239 (25 bp)
CCCAGCCTGATCGAGCTCTAGTAAA
LOC_Os06g42120
Os.56146.1.S1_at--783--4051Chr06:25291165..25291189 (25 bp)
CGATGTGATGGTTAGCGGTTGCCCT
LOC_Os06g42120
Os.56146.1.S1_at--944--9991Chr06:25291153..25291177 (25 bp)
TAGCGGTTGCCCTTCTATATATGAA
LOC_Os06g42120
Os.56146.1.S1_at--561--1931Chr06:25291121..25291145 (25 bp)
ACGGAAGTACCATCTATATCTATAT
LOC_Os06g42120
Os.56146.1.S1_at--973--9371Chr06:25291081..25291105 (25 bp)
TCTATGAAATTGGAGGAGTTGCCCC
LOC_Os06g42120
Target Sequence 
CGAGCGGGTGCTCTTCCTCAGGTACGAGGAGATGAAGCGGGACCCGGCGGGGCACGTGCGGAGGCTGGCGGAGTTCGCCG
GGGTCCCCTTCACCTCGCCGGAGGAAGACGGCGGCGCGGTGGACGCCATTGTCAGGCTGTGCTCGTTCGACAACATGGTC
GGCCTGGAGGCGACCAAGGGTGGCCGCACGTAGCTCACAACCACAACCGTGCCGAACAGCGCGTTCTTCCGGCGTGGAGA
GGTTGGAGACTGGGCGAACCATCTGTCTCCGGAGATGGCGCAACGAATCGACGCCATCACCGAGGCTAAGTTTGCAGGTT
TTGGCCTAGCGCCCAGCCTGATCGAGCTCTAGTAAAAAGAAGGGGGTGTATTTTCATTAGACGATGTGATGGTTAGCGGT
TGCCCTTCTATATATGAATGAAATTACGGAAGTACCATCTATATCTATATCTATACTAATATATATCTATGAAATTGGAG
GAGTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis