Browse Element(s) Details


Os.56157.1.A1_at

Description gb:AK109469.1
DB_XREF= gi:32994678
TID=Os.56157.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D02, full insert sequence.
FL= gb:AK109469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4194011/11teosinte glume architecture 1, putative, expressed
LOC_Os10g407801/11transcriptional regulator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41920Os.40855.2.S1_x_at8/118+26351194..26352800hypothetical protein
LOC_Os08g41920Os.40855.4.S1_x_at2/118+26351194..26352800hypothetical protein
LOC_Os08g41930Os.40855.5.S1_x_at1/118+26354418..26355038hypothetical protein
LOC_Os08g41940Os.56157.1.A1_at11/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41940OsAffx.2442.1.S1_x_at1/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41950Os.4153.1.S1_a_at11/118+26374337..26379418SRF-type transcription factor family protein, expressed
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56157.1.A1_at--425--9611Chr08:26372826..26372850 (25 bp)
TCATCTCTGGCCTTCAGTTCGGCGG
LOC_Os08g41940
Os.56157.1.A1_at--998--3191Chr08:26373016..26373040 (25 bp)
CAATGGGATGTTTCACGTCGGCGGC
LOC_Os08g41940
Os.56157.1.A1_at--569--5291Chr08:26373041..26373065 (25 bp)
GAAGGCTCATCGGATGGCACGTCGT
LOC_Os08g41940
Os.56157.1.A1_at--58--6931Chr08:26373106..26373130 (25 bp)
GTATGTTGCTGCCTTAGTTTCAGTA
LOC_Os08g41940
Os.56157.1.A1_at--94--4451Chr08:26373116..26373140 (25 bp)
GCCTTAGTTTCAGTAGAGTTGGTTC
LOC_Os08g41940
Os.56157.1.A1_at--661--6031Chr08:26373131..26373155 (25 bp)
GAGTTGGTTCTTCATTTCTTTTCAG
LOC_Os08g41940
Os.56157.1.A1_at--231--10391Chr08:26373179..26373203 (25 bp)
TTTTCTGCCATGGTAAGTTCCTTTT
LOC_Os08g41940
Os.56157.1.A1_at--864--3651Chr08:26373210..26373234 (25 bp)
CTTCTTCTTGCCTTCATTTGAGTTA
LOC_Os08g41940
Os.56157.1.A1_at--918--7791Chr08:26373295..26373319 (25 bp)
GGTCTCAACATGATGGTGCCAAGTG
LOC_Os08g41940
Os.56157.1.A1_at--860--7271Chr08:26373310..26373334 (25 bp)
GTGCCAAGTGAGAACTGCAGTATTG
LOC_Os08g41940
Os.56157.1.A1_at--550--5032Chr08:26373326..26373350 (25 bp)
GCAGTATTGTGCAGTTTTCAGTTTT
LOC_Os08g41940
Target Sequence 
TCATCTCTGGCCTTCAGTTCGGCGGCGGCGGCGGCAGCTCAGCCTGGTTCGCGGCGCGGCCGCATCATCAGGCGGCCACC
GGCGCCGCCGCCACCGNCCGTCGTCGTCTCGACGGCCGGTTTCTCCTGCCCGGTGGTGGAGAGCGAGCAGCTGAACACAG
TCCTGAGCTCCAATGACAATGAGATGAACTACAATGGGATGTTTCACGTCGGCGGCGAAGGCTCATCGGATGGCACGTCG
TCGTCTCTGCCGTNCTCATGGCAGTAGTTTTTTCAGTAACTGTATGTTGCTGCCTTAGTTTCAGTAGAGTTGGTTCTTCA
TTTCTTTTCAGTGATCAAATTATTGTTTCTGTTTCTTTTCTGCCATGGTAAGTTCCTTTTTTTTNNTTCTTCTTCTTGCC
TTCATTTGAGTTAATTACAGCATTGATTTGTGTGAACAAAATTCATCATAAATCAGTTCCTCNCGAGATCATTGGTCTCA
ACATGATGGTGCCAAGTGAGAACTGCAGTATTGTGCAGTTTTCAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56157.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis