Browse Element(s) Details


Os.56197.1.S1_at

Description gb:AK109597.1
DB_XREF= gi:32994806
TID=Os.56197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D08, full insert sequence.
FL= gb:AK109597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g139107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13870OsAffx.29181.1.S1_at11/118+8276619..8278991D-mannose binding lectin family protein
LOC_Os08g13880NANA8+8283927..8284870hypothetical protein
LOC_Os08g13890Os.27605.1.S1_at11/118+8290891..8293230Exonuclease, putative, expressed
LOC_Os08g13900OsAffx.16986.1.S1_at9/118+8294616..8295803expressed protein
LOC_Os08g13900Os.27718.1.A1_at1/118+8294616..8295803expressed protein
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein
LOC_Os08g13920Os.12288.1.S1_at11/118+8321646..8323055Glycosyl hydrolases family 16 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56197.1.S1_at--684--511Chr08:8304898..8304922 (25 bp)
ATCGATGAAACCAGCCTCAGTGAGA
LOC_Os08g13910
Os.56197.1.S1_at--412--931Chr08:8305005..8305029 (25 bp)
AGGCAATCCTGACCGTTCATTTTTT
LOC_Os08g13910
Os.56197.1.S1_at--1139--6731Chr08:8305019..8305043 (25 bp)
GTTCATTTTTTCACGTGTCAGCACA
LOC_Os08g13910
Os.56197.1.S1_at--274--8731Chr08:8305034..8305058 (25 bp)
TGTCAGCACAGGAGCCCTCTAGATT
LOC_Os08g13910
Os.56197.1.S1_at--13--10471Chr08:8305075..8305099 (25 bp)
TTACCAGTGCCTTTCAGCTCATGGG
LOC_Os08g13910
Os.56197.1.S1_at--634--3171Chr08:8305111..8305135 (25 bp)
AATTGTTCCAACTGCCACTTTTGGG
LOC_Os08g13910
Os.56197.1.S1_at--604--2891Chr08:8305160..8305184 (25 bp)
AAGGTGATCCGGACATGTGGGCCCC
LOC_Os08g13910
Os.56197.1.S1_at--257--771Chr08:8305174..8305198 (25 bp)
ATGTGGGCCCCTCTCGTGGTAGAAA
NONE
Os.56197.1.S1_at--1042--9751Chr08:8305288..8305312 (25 bp)
TAATCTTATCTTAGCCACGTAGCAT
NONE
Os.56197.1.S1_at--1075--7431Chr08:8305313..8305337 (25 bp)
GTGTACGGTTTGATGTGTGTCCACA
NONE
Os.56197.1.S1_at--565--2871Chr08:8305368..8305392 (25 bp)
AAGTGGTACCGATTGCCTCTATAAA
NONE
Target Sequence 
ATCGATGAAACCAGCCTCAGTGAGAGTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTC
TTTGGAATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCACAGGAGCCCTCTAGAT
TGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCACGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGC
CCATTCCGTTGGGTGCGTGCCCAAGGTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAA
GATCAGCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTTGCTCCTAATCTTATC
TTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGGGAGAATTTACTAATCATAAAACATGAAGTGGTACC
GATTGCCTCTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis