Browse Element(s) Details


Os.56210.1.S1_at

Description gb:AK109620.1
DB_XREF= gi:32994829
TID=Os.56210.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A05, full insert sequence.
FL= gb:AK109620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4295011/11Myb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56210.1.S1_at--934--8011Chr04:25186540..25186564 (25 bp)
GGAGGACTTGATCATGCACCAGGAC
LOC_Os04g42950
Os.56210.1.S1_at--27--971Chr04:25186520..25186544 (25 bp)
AGGACGCGATGGACGACCTCATGAT
LOC_Os04g42950
Os.56210.1.S1_at--48--5931Chr04:25186329..25186353 (25 bp)
GAGCATGCACGCTGTGGTAGATCAA
LOC_Os04g42950
Os.56210.1.S1_at--465--7851Chr04:25186314..25186338 (25 bp)
GGTAGATCAATTTCCCGGTCTGCAT
LOC_Os04g42950
Os.56210.1.S1_at--288--1151Chr04:25186270..25186294 (25 bp)
AGTCGCGATCTCGAGTACGTGCATA
LOC_Os04g42950
Os.56210.1.S1_at--290--9871Chr04:25186247..25186271 (25 bp)
TACAGACGACATAGCTGCGGCGTGC
LOC_Os04g42950
Os.56210.1.S1_at--871--5631Chr04:25186205..25186229 (25 bp)
GACAGCAAACTTATCATCCGTGGAT
LOC_Os04g42950
Os.56210.1.S1_at--884--391Chr04:25186193..25186217 (25 bp)
ATCATCCGTGGATCGATCGTACGTC
LOC_Os04g42950
Os.56210.1.S1_at--1020--5731Chr04:25186155..25186179 (25 bp)
GACGGCCTGAGTCGATGACACGTTA
LOC_Os04g42950
Os.56210.1.S1_at--808--7011Chr04:25186122..25186146 (25 bp)
GTACTATTATTGGTCACACTTCTTT
LOC_Os04g42950
Os.56210.1.S1_at--499--9811Chr04:25186084..25186108 (25 bp)
TAACTAATGTGTTCTTTTCCCCTTG
LOC_Os04g42950
Target Sequence 
GGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTCATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACG
GCGCCGCCGTCGCCGGCCATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGC
GAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGCACGCTGTGGTAGATCAATTT
CCCGGTCTGCATGACGCCATGAGAGAAGAGTAGTCGCGATCTCGAGTACGTGCATACAGACGACATAGCTGCGGCGTGCT
CGTGGGATAAAGATGGGACAGCAAACTTATCATCCGTGGATCGATCGTACGTCCACTTCCACAAACGACGGCCTGAGTCG
ATGACACGTTAAAGCCATAGTACTATTATTGGTCACACTTCTTTAATCAGGGGAGATTAACTAATGTGTTCTTTTCCCCT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis