Browse Element(s) Details


Os.56238.1.S1_at

Description gb:AK109670.1
DB_XREF= gi:32994879
TID=Os.56238.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B01, full insert sequence.
FL= gb:AK109670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g165601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56238.1.S1_at--703--6631Chr11:9157403..9157427 (25 bp)
GTTGTTTCAGCAATCTTGGACCAGA
LOC_Os11g16560
Os.56238.1.S1_at--254--6211Chr11:9157020..9157380 (25 bp)
GAGGCTCCAAGCAATTTGAATCCAG
NONE
Os.56238.1.S1_at--248--5891Chr11:9156969..9156993 (25 bp)
GAGCGGCTCACATGTGATGGTTCAC
NONE
Os.56238.1.S1_at--359--6251Chr11:9156954..9156978 (25 bp)
GATGGTTCACATCAACATACCCGAA
NONE
Os.56238.1.S1_at--424--4731Chr11:9156928..9156952 (25 bp)
GCTGTGTCCTTGTGCGTGAAATGTA
NONE
Os.56238.1.S1_at--1098--4891Chr11:9156750..9156774 (25 bp)
GCTTAAAACTGATGGCTCTCCTTGA
NONE
Os.56238.1.S1_at--332--10831Chr11:9156710..9156734 (25 bp)
TTGTCCCTGTTGTTTGTCCCAACAA
NONE
Os.56238.1.S1_at--404--5591Chr11:9156685..9156709 (25 bp)
GAAATCGCCATTTTGCAAACTGTGC
NONE
Os.56238.1.S1_at--101--651Chr11:9156574..9156598 (25 bp)
ATGCATTTCAAGTGCCATTGGCCCA
NONE
Os.56238.1.S1_at--1087--4971Chr11:9156501..9156525 (25 bp)
GCATCCATGCATCCCTTAGAATATT
NONE
Os.56238.1.S1_at--450--3771Chr11:9156466..9156490 (25 bp)
CTCTCTTCTTTACATGCATCATTCA
NONE
Target Sequence 
GTTGTTTCAGCAATCTTGGACCAGATCAACCTGCTCAAGTTGTAGATGAGGCTCCAAGCAATTTGAATCCAGGAGCATGC
TTGTACATGCAGATGGATGAGCGGCTCACATGTGATGGTTCACATCAACATACCCGAAGGCTGTGTCCTTGTGCGTGAAA
TGTAAAAAAGTTGTTGCTGTCATAACTCATAAGAGGAAACAAGTGGAGATGATCAGCTTAAAACTGATGGCTCTCCTTGA
TGAGCAAAGCAAACTTTGTCCCTGTTGTTTGTCCCAACAAGAAATCGCCATTTTGCAAACTGTGCAACGGTTGATGCAAA
AGAAGGGAATATGGATACCTGTGAATCATCCTATGGTATTTGCTAGGATGTTACACATCGAAAGGAAATGCATGCATTTC
AAGTGCCATTGGCCCATTGCCCTACAATCTATATACATGCAAGAGTGCAGGATGCAAATGCATTGCATCCATGCATCCCT
TAGAATATTCTATTTTTTTCTCTCTTCTTTACATGCATCATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis