Browse Element(s) Details


Os.56260.1.S1_at

Description gb:AK109710.1
DB_XREF= gi:32994919
TID=Os.56260.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G12, full insert sequence.
FL= gb:AK109710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0971011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56260.1.S1_at--472--10131Chr08:5605562..5605586 (25 bp)
TATGCTGAAACAATTCCTCCAACGT
LOC_Os08g09710
Os.56260.1.S1_at--424--611Chr08:5605563..5605587 (25 bp)
ATGCTGAAACAATTCCTCCAACGTA
LOC_Os08g09710
Os.56260.1.S1_at--247--6751Chr08:5605611..5605635 (25 bp)
GTTCATCACACTTCTAGCACTCATA
LOC_Os08g09710
Os.56260.1.S1_at--439--10551Chr08:5605612..5605636 (25 bp)
TTCATCACACTTCTAGCACTCATAA
LOC_Os08g09710
Os.56260.1.S1_at--797--9591Chr08:5605613..5605637 (25 bp)
TCATCACACTTCTAGCACTCATAAT
LOC_Os08g09710
Os.56260.1.S1_at--1070--371Chr08:5605615..5605639 (25 bp)
ATCACACTTCTAGCACTCATAATGG
LOC_Os08g09710
Os.56260.1.S1_at--568--7351Chr08:5605936..5605960 (25 bp)
GTGAATTGCTATATGCCTATATCAT
LOC_Os08g09710
Os.56260.1.S1_at--369--5211Chr08:5605938..5605962 (25 bp)
GAATTGCTATATGCCTATATCATGT
LOC_Os08g09710
Os.56260.1.S1_at--420--4871Chr08:5605943..5605967 (25 bp)
GCTATATGCCTATATCATGTTTGAT
LOC_Os08g09710
Os.56260.1.S1_at--166--10151Chr08:5605947..5605971 (25 bp)
TATGCCTATATCATGTTTGATGTAT
LOC_Os08g09710
Os.56260.1.S1_at--698--8771Chr08:5605967..5605991 (25 bp)
TGTATTGAGTAGTAATTGGCAGCGG
LOC_Os08g09710
Target Sequence 
TATGCTGAAACAATTCCTCCAACGTAACGGCATATCACTTGAGAAGATTGTTCATCACACTTCTAGCACTCATAATGGCG
AAGAAGACGGAGGCGGGGACTCCAGTGCGAAACGGAAGGCGCAAGGCGAAGTTGCGAGGCTAGCAGTGAAACAGAGGAGG
GCGCGAAACAGTAGAAGCCCGGAGTGAGGGGAACATGTTTAAAATGCTGAGGAATCCAGTGCTGAGTTTACATTGCAGTT
AGCAGTAGAATTCTTCACAGGATGTGTATATGCATCAAATCTAGTACAGGTACTTTGGGGACATGAAAAATTATGCATCC
GTTGGTGTTGCATGAAAATAGATCGTTGGTCAATGTTCAGTGACTTGGAATCCTGTGAATTGCTATATGCCTATATCATG
TTTGATGTATTGAGTAGTAATTGGCAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis