Browse Element(s) Details


Os.5630.1.S1_at

Description gb:AK060957.1
DB_XREF= gi:32970975
TID=Os.5630.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G11, full insert sequence.
FL= gb:AK060957.1 gb:AK073513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1664011/11U1 zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16590NANA2+9479608..9484114transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16600Os.8797.1.S1_at11/112+9489228..9494238expressed protein
LOC_Os02g16610OsAffx.12070.1.S1_at11/112+9495105..9495710Harpin-induced protein 1 containing protein
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5630.1.S1_at--603--8631Chr02:9506353..9506377 (25 bp)
TGGGGCACCTCCAGCCATGTATCAA
LOC_Os02g16640
Os.5630.1.S1_at--459--8771Chr02:9506336..9506360 (25 bp)
TGTATCAAACAAATCCACCGCAACC
LOC_Os02g16640
Os.5630.1.S1_at--399--10171Chr02:9506334..9506358 (25 bp)
TATCAAACAAATCCACCGCAACCTG
LOC_Os02g16640
Os.5630.1.S1_at--1126--9031Chr02:9506311..9506335 (25 bp)
TGCAGGCCCAACTTCTGGTGCTCCA
LOC_Os02g16640
Os.5630.1.S1_at--366--5051Chr02:9506262..9506286 (25 bp)
GCAGCACCTCCACAGGCTCCTTTCT
LOC_Os02g16640
Os.5630.1.S1_at--291--211Chr02:9505912..9505936 (25 bp)
ATTTGTTCTTCGGTTTGGTGAACAT
LOC_Os02g16640
Os.5630.1.S1_at--538--8771Chr02:9505909..9505933 (25 bp)
TGTTCTTCGGTTTGGTGAACATTAC
LOC_Os02g16640
Os.5630.1.S1_at--878--9411Chr02:9505903..9505927 (25 bp)
TCGGTTTGGTGAACATTACCCCGTG
LOC_Os02g16640
Os.5630.1.S1_at--1100--10231Chr02:9505899..9505923 (25 bp)
TTTGGTGAACATTACCCCGTGTAAT
LOC_Os02g16640
Os.5630.1.S1_at--876--2471Chr02:9505892..9505916 (25 bp)
AACATTACCCCGTGTAATTTGTATG
LOC_Os02g16640
Os.5630.1.S1_at--12--3591Chr02:9505890..9505914 (25 bp)
CATTACCCCGTGTAATTTGTATGAA
LOC_Os02g16640
Target Sequence 
TGGGGCACCTCCAGCCATGTATCAAACAAATCCACCGCAACCTGCAGGCCCAACTTCTGGTGCTCCACCTCCGGTTNCTG
CTCCACNCTCCAGCAGCACCTCCACAGGCTCCTTTCTCCTATGCACAACCTCCTGAGGGCAACCACTGATTGTGTTCTTT
GGGCTTTTATTTAAGAAGCATATGAAGTATGCCCAGTNTGATCCATTGGAANATGATGCTGCTATCGTTTAAATGAGATC
AACTGTCACTTAATTTGAGGGATTGTTGAAGAAGGCTTCTTGTAACTGTATCTGTGCATCTGGTGATGGTATTTTAGATA
TGTAACGTTAATTTTGTAATCTGCTGAAGTTAGTATTGATTTCAGAACACATTTACCAAAGCTGGTAACGGGATCGTTCC
TCAAATATTTGGCATGGCTCTGTAGTACTAGTTTCTGTGATGATTTGTTCTTCGGTTTGGTGAACATTACCCCGTGTAAT
TTGTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis