Browse Element(s) Details


Os.56307.1.S1_at

Description gb:AK109827.1
DB_XREF= gi:32995036
TID=Os.56307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-B06, full insert sequence.
FL= gb:AK109827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1168011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11650Os.26440.1.S1_at11/113+6058276..6063592expressed protein
LOC_Os03g11660Os.53195.1.A1_at11/113+6064755..6068165Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56307.1.S1_at--1030--7271Chr03:6078088..6078112 (25 bp)
GTCCAATACAAAACGCCTATGCATT
LOC_Os03g11680
Os.56307.1.S1_at--924--7111Chr03:6078029..6078053 (25 bp)
GTCAGGTTTCATGCTGTTTCTAGAC
LOC_Os03g11680
Os.56307.1.S1_at--56--231Chr03:6077879..6077903 (25 bp)
ATATTTTTCACGGAATCGGTCACAT
LOC_Os03g11680
Os.56307.1.S1_at--128--251Chr03:6077795..6077819 (25 bp)
ATATACTTTTCATGCGGCCCAGTAA
LOC_Os03g11680
Os.56307.1.S1_at--90--8431Chr03:6077749..6077773 (25 bp)
GGCCTGTACGTATGCACACGCTAAA
LOC_Os03g11680
Os.56307.1.S1_at--97--9811Chr03:6077701..6077725 (25 bp)
TAAAATTCTTTCTGAAGCGGGTGCA
LOC_Os03g11680
Os.56307.1.S1_at--958--10351Chr03:6077664..6077688 (25 bp)
TTTTTTAATCCTCTGTACGTGCGTA
LOC_Os03g11680
Os.56307.1.S1_at--666--7291Chr03:6077646..6077670 (25 bp)
GTGCGTACCTATGGGCAACAGTTCT
LOC_Os03g11680
Os.56307.1.S1_at--387--4771Chr03:6077614..6077638 (25 bp)
GCTGCTGCTTGTATGCAATGAGGCT
LOC_Os03g11680
Os.56307.1.S1_at--557--6951Chr03:6077589..6077613 (25 bp)
GTAGCTTTATGTGTAGCTTTCGCAT
LOC_Os03g11680
Os.56307.1.S1_at--526--10291Chr03:6077572..6077596 (25 bp)
TTTCGCATGTCGCTAGGGTCAGGTA
LOC_Os03g11680
Target Sequence 
GTCCAATACAAAACGCCTATGCATTTGAAAATGTTTACTAAGTAGTTAGTTGAGGAACAGTCAGGTTTCATGCTGTTTCT
AGACAATAAATGTGCATATTAATTCCTACGATGAAAGAGAACAGAAATTACAACTGCATGCATTAACCAATTTCAATTTC
GGATTGCAAAAGCACCAGGGACAATAAAAGAGTAAGATTTTAACTGATCATATTTTTCACGGAATCGGTCACATATAAGT
AAGCTGAAAGTGCACAATACTTTTTCAACAATTGAAAAAAAAAATCATAATGCATATACTTTTCATGCGGCCCAGTAAAC
TGCTGCAGCTTGCAGGGCCGGCCTGTACGTATGCACACGCTAAAAAACATGAAGGATATAGACACTAAAATTCTTTCTGA
AGCGGGTGCAGAGTTTTTTGTTTTTTTTAATCCTCTGTACGTGCGTACCTATGGGCAACAGTTCTAGCAACTGCTGCTGC
TTGTATGCAATGAGGCTGTAGCTTTATGTGTAGCTTTCGCATGTCGCTAGGGTCAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis