Browse Element(s) Details


Os.24065.1.A1_x_at

Description gb:AK106411.1
DB_XREF= gi:32991620
TID=Os.24065.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A01, full insert sequence.
FL= gb:AK106411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1169010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24065.1.A1_x_at--277--2831NONE
AAGTTCTCAACCAAGGTCTCTTCTG
NONE
Os.24065.1.A1_x_at--945--2891Chr03:6097296..6097319 (24 bp)
AAGGTCTCTTCTGCATATACATATG
LOC_Os03g11690
Os.24065.1.A1_x_at--520--7691Chr03:6097340..6097364 (25 bp)
GGGTGGTCACGCATTTGTCAAGTGT
LOC_Os03g11690
Os.24065.1.A1_x_at--367--3591Chr03:6097447..6097471 (25 bp)
CATTTTAGCCGAGTAACAGGACCAT
LOC_Os03g11690
Os.24065.1.A1_x_at--28--7571Chr03:6097513..6097537 (25 bp)
GGGCGCATCAACCTACTTAGATTTG
LOC_Os03g11690
Os.24065.1.A1_x_at--33--10051Chr03:6097530..6097554 (25 bp)
TAGATTTGCCTACCCATTTGGATGA
LOC_Os03g11690
Os.24065.1.A1_x_at--197--231Chr03:6097578..6097602 (25 bp)
ATATACATTCGGTGTGCCCTACTTG
LOC_Os03g11690
Os.24065.1.A1_x_at--955--8551Chr03:6097666..6097690 (25 bp)
TGGATGGACCTTGTAACTCCTGTCT
LOC_Os03g11690
Os.24065.1.A1_x_at--1137--2811Chr03:6097694..6097718 (25 bp)
AAGTTCCCTGAGATGGCACTGTAAT
LOC_Os03g11690
Os.24065.1.A1_x_at--913--8071Chr03:6097746..6097770 (25 bp)
GGAGCTCTCAGACCTAACTTATTTG
LOC_Os03g11690
Os.24065.1.A1_x_at--498--10071Chr03:6097801..6097825 (25 bp)
TAGTGCTACTGTTTACTGCCTGAAA
LOC_Os03g11690
Target Sequence 
AAGTTCTCAACCAAGGTCTCTTCTGCATATACATATGAATGCAACCTTGGAAATGAAGGGTGGTCACGCATTTGTCAAGT
GTACTCATCTGATAAGATGTCTGAGAGCATGTCTAGTATGAACACATTTGTTCATTCAACTTTGGATCATCGATGTGAAT
TTATCATTTTAGCCGAGTAACAGGACCATNTTCGTTTTCATTTGGGGTGTGGAAGGCTGGAAGCTGCTAGGGGCGCATCA
ACCTACTTAGATTTGCCTACCCATTTGGATGATGATAAATCACATGGGCTACNCAATATACATTCGGTGTGCCCTACTTG
GAAAGTGATGTGCTGTTAGAATGAGAATGGCATAGGCATACTGTAATTAGCATAAGAGTTTGTTGGATGGACCTTGTAAC
TCCTGTCTCCTAAGTTCCCTGAGATGGCACTGTAATAGTAACTAGCACTTNTGAGTCGTGTGTGGAGCTCTCAGACCTAA
CTTATTTGCTAGTAGATGAGTAGAGACNNNNACAGAACTGCTTAGTGCTACTGTTTACTGCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24065.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis