Browse Element(s) Details


Os.27615.1.S1_at

Description gb:AK101556.1
DB_XREF= gi:32986765
TID=Os.27615.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050B03, full insert sequence.
FL= gb:AK101556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1173411/11MATE efflux family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11770Os.53620.1.S1_at11/113+6139063..6142984expressed protein
LOC_Os03g11780Os.50204.1.S1_at9/113+6143078..6143675expressed protein
LOC_Os03g11790Os.15567.1.S1_at11/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11790OsAffx.7424.1.S1_at4/113+6146122..6153106F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27615.1.S1_at--384--2311Chr03:6111724..6111843 (25 bp)
AAAGGCATTCCTTTTGTCGCTGGCA
LOC_Os03g11734
Os.27615.1.S1_at--358--2251Chr03:6111689..6111713 (25 bp)
AAATTCACTAGCCTTCGTGTTCGAT
LOC_Os03g11734
Os.27615.1.S1_at--1061--8491Chr03:6111665..6111689 (25 bp)
TGGCATCAACTTCGGAGCATCAGAC
LOC_Os03g11734
Os.27615.1.S1_at--70--4971Chr03:6111649..6111673 (25 bp)
GCATCAGACTACACATACTCAGCTT
LOC_Os03g11734
Os.27615.1.S1_at--326--331Chr03:6111639..6111659 (21 bp)
ATACTCAGCTTACTCCATGGTTGGT
LOC_Os03g11734
Os.27615.1.S1_at--414--6631Chr03:6111512..6111536 (25 bp)
GTTGGTGTGGCTGCTATCTCCATAC
LOC_Os03g11734
Os.27615.1.S1_at--1096--6871Chr03:6111479..6111503 (25 bp)
GTATACCTTTCTGCTCATAACGGAT
LOC_Os03g11734
Os.27615.1.S1_at--795--4471Chr03:6111418..6111442 (25 bp)
GCCTGAGGACCATAGCTAGCACTTG
LOC_Os03g11734
Os.27615.1.S1_at--897--7871Chr03:6111215..6111239 (25 bp)
GGTTTTCAACTTCTCATGGCGATTA
LOC_Os03g11734
Os.27615.1.S1_at--301--7031Chr03:6111118..6111142 (25 bp)
GTACAGTTCTTAGCGCATGTCGTGG
LOC_Os03g11734
Os.27615.1.S1_at--948--5251Chr03:6111073..6111097 (25 bp)
GAATCGGGATCGTATCTGACTCATT
LOC_Os03g11734
Target Sequence 
AAAGGCATTCCTTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATC
AGACTACACATACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATA
ACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGAATGGGGGCA
GCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTT
GCTGGTAGATAGCCATGCATACTAGTACTAGCTCTCATGTAATTAAAAATAAGTACAGTTCTTAGCGCATGTCGTGGTGT
CGAGTTTATTGCTTCGTGAATCGGGATCGTATCTGACTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis