Browse Element(s) Details


OsAffx.25059.1.S1_at

Description tigr:9631.m01092
TID=OsAffx.25059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1173410/11MATE efflux family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11770Os.53620.1.S1_at11/113+6139063..6142984expressed protein
LOC_Os03g11780Os.50204.1.S1_at9/113+6143078..6143675expressed protein
LOC_Os03g11790Os.15567.1.S1_at11/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11790OsAffx.7424.1.S1_at4/113+6146122..6153106F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25059.1.S1_at--479--6671Chr03:6118346..6118370 (25 bp)
GTTGCATCACAAGTTCAGTTACATT
LOC_Os03g11734
OsAffx.25059.1.S1_at--924--6751Chr03:6118329..6118353 (25 bp)
GTTACATTCCAACAGGGCAACCAAA
LOC_Os03g11734
OsAffx.25059.1.S1_at--304--2131Chr03:6118304..6118328 (25 bp)
ACAGGAGTTTGCTGCGTAACACACA
LOC_Os03g11734
OsAffx.25059.1.S1_at--467--9131Chr03:6118292..6118316 (25 bp)
TGCGTAACACACATTCGATTCAGGA
LOC_Os03g11734
OsAffx.25059.1.S1_at--191--951Chr03:6118271..6118295 (25 bp)
AGGAAACAATCCCTGATTCAGCTTT
LOC_Os03g11734
OsAffx.25059.1.S1_at--487--10511Chr03:6118255..6118279 (25 bp)
TTCAGCTTTTCTTACGTTCCTTTCT
LOC_Os03g11734
OsAffx.25059.1.S1_at--787--6691Chr03:6118240..6118264 (25 bp)
GTTCCTTTCTGACCCTGAACCATAT
LOC_Os03g11734
OsAffx.25059.1.S1_at--607--5431Chr03:6118224..6118248 (25 bp)
GAACCATATCAACAGCGACTCAAGA
LOC_Os03g11734
OsAffx.25059.1.S1_at--602--5551NONE
GAAAGCTGTAATACGGTGCCCAAAG
NONE
OsAffx.25059.1.S1_at--160--9211Chr03:6116585..6116609 (25 bp)
TCCAACCTTCTCTTACCCAAATAAT
LOC_Os03g11734
OsAffx.25059.1.S1_at--258--1531Chr03:6116508..6116532 (25 bp)
AGCAGAGTCCATGGAACCTCACCAA
LOC_Os03g11734
Target Sequence 
GTTGCATCACAAGTTCAGTTACATTCCAACAGGGCAACCAAAACAGGAGTTTGCTGCGTAACACACATTCGATTCAGGAA
ACAATCCCTGATTCAGCTTTTCTTACGTTCCTTTCTGACCCTGAACCATATCAACAGCGACTCAAGAAAAGGAAAGCTGT
AATACGGTGCCCAAAGCCTCCAACCTTCTCTTACCCAAATAATAATGATGATGATGATAATAATAAACTGTACGAGAAAT
CAGGTGTAACTGAAAAGCAGAGTCCATGGAACCTCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis