Browse Element(s) Details


Os.54526.1.S1_at

Description gb:AK105520.1
DB_XREF= gi:32990729
TID=Os.54526.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F09, full insert sequence.
FL= gb:AK105520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1176011/11Polygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11770Os.53620.1.S1_at11/113+6139063..6142984expressed protein
LOC_Os03g11780Os.50204.1.S1_at9/113+6143078..6143675expressed protein
LOC_Os03g11790Os.15567.1.S1_at11/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11790OsAffx.7424.1.S1_at4/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11800NANA3+6154093..6154470hypothetical protein
LOC_Os03g11810NANA3+6158258..6158530hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54526.1.S1_at--5--51Chr03:6132576..6132600 (25 bp)
ATTGTGACCGGCTCTATGTTTATAC
LOC_Os03g11760
Os.54526.1.S1_at--317--8071Chr03:6132873..6132897 (25 bp)
GGAGCAAACAAATCATGGGCCCATG
LOC_Os03g11760
Os.54526.1.S1_at--701--791Chr03:6132887..6132911 (25 bp)
ATGGGCCCATGTTTCCGACGTGCTG
LOC_Os03g11760
Os.54526.1.S1_at--715--5551Chr03:6132917..6132941 (25 bp)
GAAAGCTACACTGGTGGGCACTACC
LOC_Os03g11760
Os.54526.1.S1_at--433--3291Chr03:6132935..6132959 (25 bp)
CACTACCAACGGTGTGCGGATCAAA
LOC_Os03g11760
Os.54526.1.S1_at--995--2711Chr03:6133840..6133864 (25 bp)
AATGCACAACGTCACTAACCCGGTG
LOC_Os03g11760
Os.54526.1.S1_at--955--10471Chr03:6133879..6133903 (25 bp)
TTACTGTGACTCCATGACACCATGT
LOC_Os03g11760
Os.54526.1.S1_at--869--5491Chr03:6133996..6134017 (22 bp)
GAACAGGGATCAGCTGTCGCCATAA
LOC_Os03g11760
Os.54526.1.S1_at--707--5471Chr03:6134045..6134069 (25 bp)
GAACTAGTTCTTCAAAAGTCGCCAT
LOC_Os03g11760
Os.54526.1.S1_at--785--7171Chr03:6134077..6134101 (25 bp)
GTCTGCAGCAACTCTGTCCATTGTG
LOC_Os03g11760
Os.54526.1.S1_at--639--5311Chr03:6134137..6134161 (25 bp)
GAAGGATCCTACGTTTCTTGTTCGT
LOC_Os03g11760
Target Sequence 
ATTGTGACCGGCTCTATGTTTATACGGGCAACTGGGATATTTTGTGGACCAGGCCATGGCATAAGCATTGGTAGTCTAGG
AGCAAACAAATCATGGGCCCATGTTTCCGACGTGCTGGTGGAGAAAGCTACACTGGTGGGCACTACCAACGGTGTGCGGA
TCAAAACTTGGCAGGGAGGAGATGGCCATGCAGAAAGGATTACCTTTCAAGATATAACAATGCACAACGTCACTAACCCG
GTGATTATCGATCAGAATTACTGTGACTCCATGACACCATGTCATGAACAGGGATCAGCTGTCGCCATAAATAACATACG
CTACAGGAACATACGTGGAACTAGTTCTTCAAAAGTCGCCATCAACTTCGTCTGCAGCAACTCTGTCCATTGTGATGGCA
TAGTGATGCAGGATGTTTCTTTGGTTGGAGAAGGATCCTACGTTTCTTGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis