Browse Element(s) Details


OsAffx.25060.1.S1_at

Description tigr:9631.m01093
TID=OsAffx.25060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g117507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11770Os.53620.1.S1_at11/113+6139063..6142984expressed protein
LOC_Os03g11780Os.50204.1.S1_at9/113+6143078..6143675expressed protein
LOC_Os03g11790Os.15567.1.S1_at11/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11790OsAffx.7424.1.S1_at4/113+6146122..6153106F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25060.1.S1_at--1085--1931NONE
ACGGCATATGCGCATCGAGGCCAAA
NONE
OsAffx.25060.1.S1_at--829--4951NONE
GCATATGCGCATCGAGGCCAAATCT
NONE
OsAffx.25060.1.S1_at--380--10111NONE
TATGCGCATCGAGGCCAAATCTAGT
NONE
OsAffx.25060.1.S1_at--313--4591NONE
GCGCATCGAGGCCAAATCTAGTTGT
NONE
OsAffx.25060.1.S1_at--957--511Chr03:6124423..6124444 (22 bp)
ATCGAGGCCAAATCTAGTTGTCAAC
LOC_Os03g11750
OsAffx.25060.1.S1_at--169--6231Chr03:6124423..6124447 (25 bp)
GAGGCCAAATCTAGTTGTCAACAGA
LOC_Os03g11750
OsAffx.25060.1.S1_at--544--3011Chr03:6124430..6124454 (25 bp)
AATCTAGTTGTCAACAGAAACCAGC
LOC_Os03g11750
OsAffx.25060.1.S1_at--640--1471Chr03:6124452..6124476 (25 bp)
AGCAAAAACGTAACCTTGACACGAT
LOC_Os03g11750
OsAffx.25060.1.S1_at--967--7051Chr03:6124461..6124485 (25 bp)
GTAACCTTGACACGATCATCATGGA
LOC_Os03g11750
OsAffx.25060.1.S1_at--106--1751Chr03:6124464..6124488 (25 bp)
ACCTTGACACGATCATCATGGATGA
LOC_Os03g11750
OsAffx.25060.1.S1_at--849--7971Chr03:6124483..6124507 (25 bp)
GGATGAACCATATGGATCCTACGAC
LOC_Os03g11750
Target Sequence 
ACGGCATATGCGCATCGAGGCCAAATCTAGTTGTCAACAGAAACCAGCAAAAACGTAACCTTGACACGATCATCATGGAT
GAACCATATGGATCCTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis