Browse Element(s) Details


Os.54702.1.S1_at

Description gb:AK106498.1
DB_XREF= gi:32991707
TID=Os.54702.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E05, full insert sequence.
FL= gb:AK106498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1170011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54702.1.S1_at--1087--8371Chr03:6098423..6098447 (25 bp)
GGCGAGAGCACTACACGTGCGTGCT
LOC_Os03g11700
Os.54702.1.S1_at--943--1291Chr03:6098345..6098369 (25 bp)
AGATGCCAGCGGAATACGACGCCGA
LOC_Os03g11700
Os.54702.1.S1_at--280--1471Chr03:6098321..6098345 (25 bp)
AGAAGGCGCTGGGAGTTTACTGCTC
LOC_Os03g11700
Os.54702.1.S1_at--215--10351Chr03:6098306..6098330 (25 bp)
TTTACTGCTCCTATGCCGTATCGAA
LOC_Os03g11700
Os.54702.1.S1_at--409--1631Chr03:6098258..6098282 (25 bp)
AGCGGCTGCCGGAGTTGTTCCTCGA
LOC_Os03g11700
Os.54702.1.S1_at--44--6591Chr03:6098242..6098266 (25 bp)
GTTCCTCGACGGAGAAGTGGACGCC
LOC_Os03g11700
Os.54702.1.S1_at--1144--6191Chr03:6098213..6098237 (25 bp)
GAGGCACATACGCTGTCGTGTCCAA
LOC_Os03g11700
Os.54702.1.S1_at--130--8191Chr03:6098113..6098137 (25 bp)
GGAAGCCGCTTGTACCTGGATTGAA
LOC_Os03g11700
Os.54702.1.S1_at--981--10731Chr03:6098093..6098117 (25 bp)
TTGAAGTATAGCAACACCCTGCATC
LOC_Os03g11700
Os.54702.1.S1_at--938--9651Chr03:6098070..6098094 (25 bp)
TCACCACCAAACATTCAGATCCTTG
LOC_Os03g11700
Os.54702.1.S1_at--278--4851Chr03:6098017..6098041 (25 bp)
GCTAGACCGAAATTACACTCGTGTA
LOC_Os03g11700
Target Sequence 
GGCGAGAGCACTACACGTGCGTGCTCGACGCCTGCGGCCGAGCCGGGCAGCTTGACAGAGCTGGAGAGATCTTCAGGCAG
ATGCCAGCGGAATACGACGCCGAGAAGGCGCTGGGAGTTTACTGCTCCTATGCCGTATCGAACGGCGTTGCCGGTGTCGC
CGGCGAGCGGCTGCCGGAGTTGTTCCTCGACGGAGAAGTGGACGCCGGAGGAGGCACATACGCTGTCGTGTCCAAGTCGC
TCGCCGATGCAGGGAGGTGGGAGGATGCGTGTGCTGTCCGGGAGAGGATGGCCGAAAGAAGGATTGAAAAGGAAGCCGCT
TGTACCTGGATTGAAGTATAGCAACACCCTGCATCACCACCAAACATTCAGATCCTTGTTAACTTATAATATGAGTCGTT
GATATAGCTAGACCGAAATTACACTCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis