Browse Element(s) Details


Os.24065.2.S1_at

Description gb:AK102781.1
DB_XREF= gi:32987990
TID=Os.24065.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K05, full insert sequence.
FL= gb:AK102781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24065.2.S1_at--137--10551Chr03:6097831..6097855 (25 bp)
TTCATTCTTCTGGTCAATTCAATAG
LOC_Os03g11690
Os.24065.2.S1_at--705--9591Chr03:6097832..6097856 (25 bp)
TCATTCTTCTGGTCAATTCAATAGG
LOC_Os03g11690
Os.24065.2.S1_at--359--3591Chr03:6097833..6097857 (25 bp)
CATTCTTCTGGTCAATTCAATAGGG
LOC_Os03g11690
Os.24065.2.S1_at--63--131Chr03:6097834..6097858 (25 bp)
ATTCTTCTGGTCAATTCAATAGGGA
LOC_Os03g11690
Os.24065.2.S1_at--52--10571Chr03:6097835..6097859 (25 bp)
TTCTTCTGGTCAATTCAATAGGGAA
LOC_Os03g11690
Os.24065.2.S1_at--734--9571Chr03:6097836..6097860 (25 bp)
TCTTCTGGTCAATTCAATAGGGAAA
LOC_Os03g11690
Os.24065.2.S1_at--533--3651Chr03:6097837..6097861 (25 bp)
CTTCTGGTCAATTCAATAGGGAAAT
LOC_Os03g11690
Os.24065.2.S1_at--1029--10591Chr03:6097838..6097862 (25 bp)
TTCTGGTCAATTCAATAGGGAAATG
LOC_Os03g11690
Os.24065.2.S1_at--109--3071Chr03:6097850..6097874 (25 bp)
CAATAGGGAAATGTTGATACTTCAC
LOC_Os03g11690
Os.24065.2.S1_at--1092--271Chr03:6097852..6097876 (25 bp)
ATAGGGAAATGTTGATACTTCACAC
LOC_Os03g11690
Os.24065.2.S1_at--1085--10051Chr03:6097853..6097877 (25 bp)
TAGGGAAATGTTGATACTTCACACC
LOC_Os03g11690
Target Sequence 
TTCATTCTTCTGGTCAATTCAATAGGGAAATGTTGATACTTCACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24065.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis