Browse Element(s) Details


Os.6168.1.S1_at

Description gb:AK066051.1
DB_XREF= gi:32976069
TID=Os.6168.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051B02, full insert sequence.
FL= gb:AK101307.1 gb:AK066051.1 gb:AK121428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1172011/11Neutral alpha-glucosidase AB precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11690Os.24065.2.S1_at11/113+6094453..6097877expressed protein
LOC_Os03g11690Os.24065.1.A1_x_at10/113+6094453..6097877expressed protein
LOC_Os03g11700Os.54702.1.S1_at11/113+6097971..6099311pentatricopeptide, putative, expressed
LOC_Os03g11710OsAffx.25058.1.S1_at11/113+6100439..6101491expressed protein
LOC_Os03g11720Os.6168.1.S1_at11/113+6106449..6110270Neutral alpha-glucosidase AB precursor, putative, expressed
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6168.1.S1_at--511--571Chr03:6109690..6109714 (25 bp)
ATCCATCGTCGTTTTGTATTTGCAG
LOC_Os03g11720
Os.6168.1.S1_at--551--2511Chr03:6109725..6109749 (25 bp)
AACTTCCATGAATATCGCACCCAAA
LOC_Os03g11720
Os.6168.1.S1_at--618--171Chr03:6109767..6109791 (25 bp)
ATTTTCGACCGAGTGCGTGATTGAA
LOC_Os03g11720
Os.6168.1.S1_at--567--4751Chr03:6109873..6109897 (25 bp)
GGGCCTATTAGTCTACGAAGCGGTT
LOC_Os03g11720
Os.6168.1.S1_at--725--2671Chr03:6109890..6109914 (25 bp)
AAGCGGTTCGAGCTCTGTTGCACCA
LOC_Os03g11720
Os.6168.1.S1_at--1053--5551Chr03:6109922..6109946 (25 bp)
GAAAGCCCAATGTTCGAGTTGTAGA
LOC_Os03g11720
Os.6168.1.S1_at--476--171Chr03:6110005..6110029 (25 bp)
ATTTTCATCGCTCTCAGGTCATAAA
LOC_Os03g11720
Os.6168.1.S1_at--3--1451Chr03:6110038..6110062 (25 bp)
AGAAGCGTAGTGCTGCCTTGCTCAA
LOC_Os03g11720
Os.6168.1.S1_at--719--3511Chr03:6110115..6110139 (25 bp)
CATGTAACTGGTACGCGTGCTGTTT
LOC_Os03g11720
Os.6168.1.S1_at--158--7311Chr03:6110131..6110155 (25 bp)
GTGCTGTTTTTACTATCTACTTCAA
LOC_Os03g11720
Os.6168.1.S1_at--56--10831Chr03:6110214..6110238 (25 bp)
TTGTGTACCACGATGCATGAGATGT
LOC_Os03g11720
Target Sequence 
ATCCATCGTCGTTTTGTATTTGCAGACAATAAGCTAACTTCCATGAATATCGCACCCAAAAATCTTGGAAACAAGAAATT
TTCGACCGAGTGCGTGATTGAAAGAATTATAATCCTTGGGGTATCATCGGGATCAAAGAAGGCTATTGTTGAACCTGGAA
ATCATGAAGTGGATATTGAATTGGGGCCTATTAGTCTACGAAGCGGTTCGAGCTCTGTTGCACCAACAGTACGAAAGCCC
AATGTTCGAGTTGTAGATGATTGGACTATAAGGATAGCATGAGATATATCCATTCACATCTGAAGCCTGATGCTTATTTT
CATCGCTCTCAGGTCATAAAATTAGGCTAGAAGCGTAGTGCTGCCTTGCTCAATGTGGTCNGTGGAAGCGCAAAATTTTA
TATTTTGATGGCCTCAAAGATTTACCATGTAACTGGTACGCGTGCTGTTTTTACTATCTACTTCAAATTTTGATATAATT
TGAGACAGAAATTGCTGATGTACATCTGTAGCTTTNACACTGGTTTGTGTACCACGATGCATGAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis