Browse Element(s) Details


Os.50204.1.S1_at

Description gb:AK120090.1
DB_XREF= gi:37989713
TID=Os.50204.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021A09, full insert sequence.
FL= gb:AK120090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g117809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11734Os.27615.1.S1_at11/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11734OsAffx.25059.1.S1_at10/113+6110961..6121896MATE efflux family protein, putative, expressed
LOC_Os03g11750OsAffx.25060.1.S1_at7/113+6122535..6124537hypothetical protein
LOC_Os03g11760Os.54526.1.S1_at11/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11760Os.43021.1.S1_at1/113+6131229..6134297Polygalacturonase precursor, putative, expressed
LOC_Os03g11770Os.53620.1.S1_at11/113+6139063..6142984expressed protein
LOC_Os03g11780Os.50204.1.S1_at9/113+6143078..6143675expressed protein
LOC_Os03g11790Os.15567.1.S1_at11/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11790OsAffx.7424.1.S1_at4/113+6146122..6153106F-box domain containing protein, expressed
LOC_Os03g11800NANA3+6154093..6154470hypothetical protein
LOC_Os03g11810NANA3+6158258..6158530hypothetical protein
LOC_Os03g11819NANA3+6161496..6162931hypothetical protein
LOC_Os03g11830Os.35344.18.S1_x_at10/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830Os.35344.3.S1_x_at9/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830OsAffx.22940.5.S1_x_at3/113+6168273..6172722Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50204.1.S1_at--842--6031Chr03:6143606..6143630 (25 bp)
GAGATCCGATCATCCATGCATGGCT
LOC_Os03g11780
Os.50204.1.S1_at--1031--9071Chr03:6143546..6143570 (25 bp)
TGCTGTACCTTTCATGCGTGGTAGC
LOC_Os03g11780
Os.50204.1.S1_at--1051--3811Chr03:6143459..6143483 (25 bp)
CTGCCAAAGCAGTTCGCCGAGCGAG
LOC_Os03g11780
Os.50204.1.S1_at--86--9151Chr03:6143295..6143319 (25 bp)
TGCGGGAGAGCCTGAGCCCCAAGCA
LOC_Os03g11780
Os.50204.1.S1_at--146--971Chr03:6143256..6143280 (25 bp)
AGGACGTCACGCTCATGAGCTTCTC
LOC_Os03g11780
Os.50204.1.S1_at--738--7151Chr03:6143224..6143248 (25 bp)
GTCTACGTCTACATCTCTCAGAAGA
LOC_Os03g11780
Os.50204.1.S1_at--1110--9511Chr03:6143211..6143235 (25 bp)
TCTCTCAGAAGATCGTGTGCACATA
LOC_Os03g11780
Os.50204.1.S1_at--208--8691Chr03:6143196..6143220 (25 bp)
TGTGCACATATTGCGCCTGGATCTC
LOC_Os03g11780
Os.50204.1.S1_at--358--6411NONE
GATCTCCAAGATCAATCACTAGCTA
NONE
Os.50204.1.S1_at--372--5631Chr03:6143150..6143176 (25 bp)
GACACAGTATCTTTCCAGTAGTTGC
LOC_Os03g11780
Os.50204.1.S1_at--539--331Chr03:6143078..6143101 (24 bp)
ATAAAACTGACGCTTGTTTGGTGTC
NONE
Target Sequence 
GAGATCCGATCATCCATGCATGGCTGCTTCTCCCCTGCGCCTCCTCGCCATCGGCGCCGCTGCTGTACCTTTCATGCGTG
GTAGCCGCCACCCGCGAGGACGACGAGCCGACGCCGTGTCTAGGCCGCCGAGATCATCGTCCTTCCTCTGCCAAAGCAGT
TCGCCGAGCGAGCCGCCGGGATCGCCGGCCGGTGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGGAA
GAAGAGCGCGTGGTGGGCCGCCGCCATGGCCGAGAGGGTGTTCGGCGACGCGGCGAAGGCCGGGAGGGCGGTGCGGGAGA
GCCTGAGCCCCAAGCAGAAGGGGGACTGGAAGGACGTCACGCTCATGAGCTTCTCCTTCGCCGTCTACGTCTACATCTCT
CAGAAGATCGTGTGCACATATTGCGCCTGGATCTCCAAGATCAATCACTAGCTAGACACAGTATCTTTCCAGTAGTTGCA
TATACTCCTATATATGAACATATATACTGTAAGTTTCTGTAGTGGCAATAAAACTGACGCTTGTTTGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis