Browse Element(s) Details


Os.56313.1.S1_at

Description gb:AK109838.1
DB_XREF= gi:32995047
TID=Os.56313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D10, full insert sequence.
FL= gb:AK109838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5727011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os03g57290Os.37336.1.S1_at11/113+32610984..32617949Cullin-4B, putative, expressed
LOC_Os03g57300Os.22663.1.S1_at11/113+32618769..32630003expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56313.1.S1_at--109--3531Chr03:32601719..32601743 (25 bp)
CATGAGCTTCTTAGTCTGTTCGTGA
LOC_Os03g57270
Os.56313.1.S1_at--90--8811Chr03:32601703..32601727 (25 bp)
TGTTCGTGACATGCTCTGCCGAGAG
LOC_Os03g57270
Os.56313.1.S1_at--173--911Chr03:32601677..32601701 (25 bp)
AGGCGGTTACTTTGCCTCAGGCAGC
LOC_Os03g57270
Os.56313.1.S1_at--245--8331Chr03:32601646..32601670 (25 bp)
GGCTGCCACAGAAGTTTCACCGTGT
LOC_Os03g57270
Os.56313.1.S1_at--1074--1771Chr03:32601628..32601652 (25 bp)
ACCGTGTGTTTGAGCGGCATCCGCA
LOC_Os03g57270
Os.56313.1.S1_at--15--4991Chr03:32601612..32601636 (25 bp)
GCATCCGCATGTTTTCTACTTGTTG
LOC_Os03g57270
Os.56313.1.S1_at--539--5531Chr03:32601579..32601603 (25 bp)
GAAAACATGCTTTGTTGTCCTCAAA
LOC_Os03g57270
Os.56313.1.S1_at--832--3731Chr03:32601560..32601584 (25 bp)
CTCAAAGAGGCATACCTGGCTCGGG
LOC_Os03g57270
Os.56313.1.S1_at--755--8631Chr03:32601438..32601462 (25 bp)
TGGGAAACCTTTTCCGTCGAAGCAT
LOC_Os03g57270
Os.56313.1.S1_at--753--3151Chr03:32601377..32601401 (25 bp)
AATTCTGCTCCAATTTTGTCATAGA
LOC_Os03g57270
Os.56313.1.S1_at--891--2691Chr03:32601352..32601376 (25 bp)
AAGCTAGAACTTTGCCTGGTCAGAA
LOC_Os03g57270
Target Sequence 
CATGAGCTTCTTAGTCTGTTCGTGACATGCTCTGCCGAGAGGAGGCGGTTACTTTGCCTCAGGCAGCACCTGGGGCTGCC
ACAGAAGTTTCACCGTGTGTTTGAGCGGCATCCGCATGTTTTCTACTTGTTGTTGAAGGAGAAAACATGCTTTGTTGTCC
TCAAAGAGGCATACCTGGCTCGGGGAGACACTGCAATTGAAGAACATCCCATGCTGGTGGTGCGGAGGAAGTATGCAGGG
TTGATGGAGGAGTCGCGGGAGATCATAAGGTGCCGGCGGAGTGGGAAACCTTTTCCGTCGAAGCATAAAGATCATGAGCA
GATTGAGGATTCTGAGGGTGCAAATTCTGCTCCAATTTTGTCATAGAAAGCTAGAACTTTGCCTGGTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis