Browse Element(s) Details


Os.56318.1.S1_at

Description gb:AK109845.1
DB_XREF= gi:32995054
TID=Os.56318.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E09, full insert sequence.
FL= gb:AK109845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g464907/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46490Os.56318.1.S1_at7/116+28228547..28232906expressed protein
LOC_Os06g46500Os.49496.1.S1_at11/116+28233462..28237337L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os06g46510OsAffx.31069.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46510Os.25754.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46520OsAffx.20387.1.S1_x_at2/116+28246043..28248619retrotransposon protein, putative, unclassified
LOC_Os06g46530NANA6+28248872..28251446retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46540NANA6+28255525..28259849Anaphase promoting complex subunit 8/cdc23 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56318.1.S1_at--665--8171Chr06:28228657..28228681 (25 bp)
GGAACCCGTGCCCAGAATCATGTTA
LOC_Os06g46490
Os.56318.1.S1_at--406--4251Chr06:28228652..28228676 (25 bp)
CCGTGCCCAGAATCATGTTAGAAGC
LOC_Os06g46490
Os.56318.1.S1_at--877--1531Chr06:28228630..28228654 (25 bp)
AGCATTGGTGGTTTGGAAATTCTAC
LOC_Os06g46490
Os.56318.1.S1_at--1019--5591Chr06:28228615..28228639 (25 bp)
GAAATTCTACTTGATGGGCTAGGAC
LOC_Os06g46490
Os.56318.1.S1_at--84--8631Chr06:28228601..28228625 (25 bp)
TGGGCTAGGACTCCCTTCAAGTAAA
LOC_Os06g46490
Os.56318.1.S1_at--916--8071Chr06:28228594..28228618 (25 bp)
GGACTCCCTTCAAGTAAATTTTCAG
LOC_Os06g46490
Os.56318.1.S1_at--232--5392Chr06:28228565..28228589 (25 bp)
GAAGAATTCATCTATCCCAAAAGAT
LOC_Os06g46490
Os.56318.1.S1_at--352--2891Chr06:28227494..28227517 (24 bp)
AAGGGTTGAAGTTCTTCTGCTCCAA
NONE
Os.56318.1.S1_at--1138--5331Chr06:28227487..28227511 (25 bp)
GAAGTTCTTCTGCTCCAAATATTAT
NONE
Os.56318.1.S1_at--938--211Chr06:28227462..28227486 (25 bp)
ATTTGGAAATTCTAAGTGAGGCAGT
NONE
Os.56318.1.S1_at--205--2871NONE
AAGTGAGGCAGTATTTGGAAATGTC
NONE
Target Sequence 
GGAACCCGTGCCCAGAATCATGTTAGAAGCATTGGTGGTTTGGAAATTCTACTTGATGGGCTAGGACTCCCTTCAAGTAA
ATTTTCAGTTTTGAAGAATTCATCTATCCCAAAAGATGAAAGGGTTGAAGTTCTTCTGCTCCAAATATTATATTTGGAAA
TTCTAAGTGAGGCAGTATTTGGAAATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis