Browse Element(s) Details


Os.56341.1.S1_at

Description gb:AK109889.1
DB_XREF= gi:32995098
TID=Os.56341.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full insert sequence.
FL= gb:AK109889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4049011/11Cellulase containing protein, expressed
LOC_Os04g405001/11glycosyl hydrolase family 5 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40510NANA4+23846150..23849402Cellulase containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56341.1.S1_at--487--8251Chr04:23839264..23839288 (25 bp)
GGCACCAGTTGCAGCAAATCCAGTT
LOC_Os04g40490
Os.56341.1.S1_at--428--4991Chr04:23839320..23839344 (25 bp)
GCATGTTTCAACTGAACTCACCAAT
LOC_Os04g40490
Os.56341.1.S1_at--966--6071Chr04:23839355..23839379 (25 bp)
GAGTATGCTTGGAGGCCAGTCCTGA
LOC_Os04g40490
Os.56341.1.S1_at--3--5171Chr04:23839403..23839427 (25 bp)
GCAAGTGCCTAACCGTAGATCCGAA
LOC_Os04g40490
Os.56341.1.S1_at--760--551Chr04:23839421..23839445 (25 bp)
ATCCGAATTGCAATCCTGAGAGTCA
LOC_Os04g40490
Os.56341.1.S1_at--455--1171Chr04:23839468..23839492 (25 bp)
AGTAAACACATACCAGGCGGCACCT
LOC_Os04g40490
Os.56341.1.S1_at--432--3591Chr04:23839494..23839518 (25 bp)
CATTTTGCAGTTGCCATCTCATGGT
LOC_Os04g40490
Os.56341.1.S1_at--456--4272Chr04:23844389..23844413 (25 bp)
CCTGGTCTCCAACATCATCTAGTTA
LOC_Os04g40500
Os.56341.1.S1_at--369--3431Chr04:23839599..23839623 (25 bp)
CAGAGCAAGTGTCAAGTTCCAGATG
LOC_Os04g40490
Os.56341.1.S1_at--451--6531Chr04:23839710..23839734 (25 bp)
GATTTCTTGTTTTCTAGAGTCCTGT
LOC_Os04g40490
Os.56341.1.S1_at--279--2251Chr04:23839790..23839815 (25 bp)
AAATACCCTGCTTTTCTTTGATACT
LOC_Os04g40490
Target Sequence 
GGCACCAGTTGCAGCAAATCCAGTTCAAAGTGGAAGCTACTATCAAATTCAGGAATGCATGTTTCAACTGAACTCACCAA
TAACGGAACCAGAGTATGCTTGGAGGCCAGTCCTGATGGAAATATCACGACAAATCAGTGCAAGTGCCTAACCGTAGATC
CGAATTGCAATCCTGAGAGTCAGTGGTTCAAAATTATATTAAGCAGTAAACACATACCAGGCGGCACCTCCATTTTGCAG
TTGCCATCTCATGGTCCCTGGTCTCCAACATCATCTAGTTAATCTTGGACTATTTCGAAAATATCCTGTTTGAATTTGAT
CAAGGACGAATATGACAGAGCAAGTGTCAAGTTCCAGATGGTTATTCAAGGCAATTGGATGACTATAGTATTGCAGCTTG
TAAAATAATACACAGAACACCGTATGTGTACAGTAGTAGTACCATTGATTTCTTGTTTTCTAGAGTCCTGTTGAAATATG
TCCTATCATATGTGTACAAAAATTAAGAATAAAAGAATGTACAGATAAATACCCTGCTTTTCTTTGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis