Browse Element(s) Details


Os.56348.1.S1_at

Description gb:AK109901.1
DB_XREF= gi:32995110
TID=Os.56348.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F09, full insert sequence.
FL= gb:AK109901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0560011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05560NANA2+2695687..2700301retrotransposon protein, putative, unclassified
LOC_Os02g05570OsAffx.10637.3.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.1.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.4.S1_s_at8/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05580OsAffx.32056.1.S1_at11/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05580OsAffx.32056.1.S1_x_at10/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05590OsAffx.24111.1.S1_at11/112+2712289..2712957Ribosome inactivating protein
LOC_Os02g05600Os.56348.1.S1_at11/112+2722134..2725216expressed protein
LOC_Os02g05600OsAffx.24112.1.S1_at10/112+2722134..2725216expressed protein
LOC_Os02g05610Os.49956.1.S1_at11/112+2728846..2734452C2H2 zinc-finger protein, putative, expressed
LOC_Os02g05620Os.54339.1.S1_at11/112+2735910..2738355exocyst subunit EXO70 family protein, putative, expressed
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56348.1.S1_at--507--7911Chr02:2724638..2724662 (25 bp)
GGTTGCTCAATAAATCTTCATCATG
LOC_Os02g05600
Os.56348.1.S1_at--88--7951Chr02:2724717..2724741 (25 bp)
GGATAATTTTCCTCTTAACACTGAC
LOC_Os02g05600
Os.56348.1.S1_at--583--251Chr02:2724743..2724767 (25 bp)
ATAGTTTCAGCAGACCATGGATCCT
LOC_Os02g05600
Os.56348.1.S1_at--481--831Chr02:2724759..2724783 (25 bp)
ATGGATCCTAAACTATGTGACCGAA
LOC_Os02g05600
Os.56348.1.S1_at--919--2931Chr02:2724865..2724889 (25 bp)
AAGGCGGAAGCACACCATCTTAATA
LOC_Os02g05600
Os.56348.1.S1_at--765--4311Chr02:2724929..2724953 (25 bp)
CCTTCTTTTGGGTCTCATCATCAAG
LOC_Os02g05600
Os.56348.1.S1_at--854--8631Chr02:2724995..2725019 (25 bp)
TGGGCATCTTATTCCATTTACCCGG
LOC_Os02g05600
Os.56348.1.S1_at--665--171Chr02:2725010..2725034 (25 bp)
ATTTACCCGGTATAGCGCAGTCATT
LOC_Os02g05600
Os.56348.1.S1_at--1142--4111Chr02:2725025..2725049 (25 bp)
CGCAGTCATTTCTATACACACCGTG
LOC_Os02g05600
Os.56348.1.S1_at--120--2191Chr02:2725040..2725064 (25 bp)
ACACACCGTGCTGGATGGAACTATT
LOC_Os02g05600
Os.56348.1.S1_at--239--91Chr02:2725192..2725216 (25 bp)
ATTCCTAGCTCCTTGCGTTGATAAT
LOC_Os02g05600
Target Sequence 
GGTTGCTCAATAAATCTTCATCATGTGGTGGTCAGGTTGAGTGGGCGTTGAAGGCTAACATCAGCCTTGAAGCAATTATG
GATAATTTTCCTCTTAACACTGACAATAGTTTCAGCAGACCATGGATCCTAAACTATGTGACCGAAGAAGCAATACGAAG
GGCACAGGAGGAGGAGGAGGAACTTGAATGGGACTTTGAAAATGGTATCATCCTTGAAACCAAAGATAAGGCGGAAGCAC
ACCATCTTAATAATATTTATTTTATAGGGTTTCATCCTTACAAAGAGATTGCCTTCTTTTGGGTCTCATCATCAAGAGTG
ATATCCTATCATTTGAATACCTCAAAGGTTCAAGAGTTGGGCATCTTATTCCATTTACCCGGTATAGCGCAGTCATTTCT
ATACACACCGTGCTGGATGGAACTATTTGAAAATAACAATTAGCTGCTAGCTAGTAGTTACTTTATCAAAGTTAGCACGT
ATTCATACACATTTAAATAAATATGTTCCCTTTTAATATATATATGTATGAACGATTGTTTAATTTAATAATTCATTCCT
AGCTCCTTGCGTTGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis