Browse Element(s) Details


Os.5640.1.S1_at

Description gb:AK070300.1
DB_XREF= gi:32980324
TID=Os.5640.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048N01, full insert sequence.
FL= gb:AK070300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3957011/11Beta-amylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5640.1.S1_at--1104--10191Chr09:22715384..22715408 (25 bp)
TTTGGAATTTGAGCGTTTCGTTAAG
LOC_Os09g39570
Os.5640.1.S1_at--998--8911Chr09:22715393..22715417 (25 bp)
TGAGCGTTTCGTTAAGAGAATGCAT
LOC_Os09g39570
Os.5640.1.S1_at--1075--4431Chr09:22715574..22715598 (25 bp)
GCCATTGTAATTGGCATAGGCCTTA
LOC_Os09g39570
Os.5640.1.S1_at--41--3431Chr09:22715617..22715641 (25 bp)
CAGAGATGCCATTTTTGTTTCGTAG
LOC_Os09g39570
Os.5640.1.S1_at--752--6351Chr09:22715621..22715645 (25 bp)
GATGCCATTTTTGTTTCGTAGGTTG
LOC_Os09g39570
Os.5640.1.S1_at--589--2231Chr09:22715735..22715759 (25 bp)
AAATTGATGGTTTCATTCGGAATGA
LOC_Os09g39570
Os.5640.1.S1_at--635--7911Chr09:22715760..22715784 (25 bp)
GGTTGGAAGCAGGTGTATTTCTTTC
LOC_Os09g39570
Os.5640.1.S1_at--529--7751Chr09:22715771..22715795 (25 bp)
GGTGTATTTCTTTCGATGCGGCAGA
LOC_Os09g39570
Os.5640.1.S1_at--975--6871Chr09:22715774..22715798 (25 bp)
GTATTTCTTTCGATGCGGCAGACAT
LOC_Os09g39570
Os.5640.1.S1_at--83--6351Chr09:22715785..22715809 (25 bp)
GATGCGGCAGACATATTTGATTTGT
LOC_Os09g39570
Os.5640.1.S1_at--834--6871Chr09:22715863..22715887 (25 bp)
GTATTGAAGAGAATGTGCTGATGCA
LOC_Os09g39570
Target Sequence 
TTTGGAATTTGAGCGTTTCGTTAAGAGAATGCATGGTGAAGCAGTTCTCGATCTACAGGTATAAGTTGTGTTCAGGGTTC
TTACATACATACATATATATACATGCCATTGTAATTGGCATAGGCCTTATGGCTTATGATGGGGGAACAGAGATGCCATT
TTTGTTTCGTAGGTTGTTGTAGTATACCATCAGCAGATTTTTGAACTATAGAGGGTTTGGCTCCATGGTGTAAAGCATAC
CCTTGGCAAAGAGTTGTCATGCAGAAAATTGATGGTTTCATTCGGAATGAGGTTGGAAGCAGGTGTATTTCTTTCGATGC
GGCAGACATATTTGATTTGTCATGAGATGAGGATTGGGTGAGCAGGTGGTATCCTTCTGAAAGATTTGAGGCTGTATTGA
AGAGAATGTGCTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis