Browse Element(s) Details


Os.56500.1.S1_at

Description gb:AK110087.1
DB_XREF= gi:32995296
TID=Os.56500.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-G06, full insert sequence.
FL= gb:AK110087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g061201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein
LOC_Os12g06130NANA12+2867423..2868868hypothetical protein
LOC_Os12g06140OsAffx.29544.1.S1_x_at4/1112+2883647..2885971hypothetical protein
LOC_Os12g06140Os.52812.1.S1_at1/1112+2883647..2885971hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56500.1.S1_at--838--8271NONE
GGCTTGGAAGAGTCACCCGGACACG
NONE
Os.56500.1.S1_at--423--6151Chr12:2859534..2859663 (24 bp)
GAGGTATTCGTGTCTGTGATTGGCA
LOC_Os12g06120
Os.56500.1.S1_at--72--8671NONE
TGTGGGCTGGCAATCGCAAGCGCTC
NONE
Os.56500.1.S1_at--295--3251NONE
CAAGCGCTCTCTGCTGTCGGAGGAA
NONE
Os.56500.1.S1_at--954--2891NONE
AAGGTGAACCAGTACTCTGCGCAGT
NONE
Os.56500.1.S1_at--302--2771NONE
AAGACGTGCTTCAACTGGTGCGCGA
NONE
Os.56500.1.S1_at--63--2771NONE
AAGACGGAGAGCCTGTTCAACCAAC
NONE
Os.56500.1.S1_at--1075--2251NONE
AAATCCGCGTCACATTAGCAGCTAG
NONE
Os.56500.1.S1_at--290--3831NONE
CTGCGCATGCGGCTGCATCATAAAA
NONE
Os.56500.1.S1_at--1049--9811NONE
TAAAATTGGCTCTTTGTCTACCGTA
NONE
Os.56500.1.S1_at--271--531NONE
ATCGCTCAAGCCCAGATCAAGGAAT
NONE
Target Sequence 
GGCTTGGAAGAGTCACCCGGACACGGTGGAGGTATTCGTGTCTGTGATTGGCAGTGTGGACGATGCATCGGCGCCGGATC
TCATCCGAGAGCTGGTGGAGGACAAGGAGGTGTTCGACGTGGCACAGGCGGGCCATGCGCGCACACTGACACGCCTGTGG
GCTGGCAATCGCAAGCGCTCTCTGCTGTCGGAGGAAGGGCGCAAGCTCACGCTGCAGCTCTTCCTGCAGGTGGGCAAGGT
GAACCAGTACTCTGCGCAGTCCTTCATCGCCGCGCTCAACGATCTGGCCAAGTTCGACGCCCAGACCACGCAGAAAGACG
TGCTTCAACTGGTGCGCGACATGCATGCGGGCCTCGACCCCGTCAAGACGGAGAGCCTGTTCAACCAACTCACCGCCACG
CTCGCACCCTACAAAGACGCCTAAAACAACGAACAAGCACAAACTACCCCCCACGTGCACAAGCAGCCAACTCAACACAA
ATCCGCGTCACATTAGCAGCTAGCTCAACGCGGCTGCGCATGCGGCTGCATCATAAAATTGGCTCTTTGTCTACCGTACG
TGCGCGACCAAATCGCTCAAGCCCAGATCAAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis