Browse Element(s) Details


Os.56875.1.S1_at

Description gb:AK110520.1
DB_XREF= gi:32995729
TID=Os.56875.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H02, full insert sequence.
FL= gb:AK110520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3439011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified
LOC_Os08g34430OsAffx.29506.1.S1_x_at11/118+21479244..21479987hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56875.1.S1_at--901--471Chr08:21458689..21458713 (25 bp)
ATCGGCCGGCTCGAGCGCTGAGTCA
LOC_Os08g34390
Os.56875.1.S1_at--467--8351Chr08:21458611..21458635 (25 bp)
GGCTGGCTCGTATGCTGGCTCGAAT
LOC_Os08g34390
Os.56875.1.S1_at--929--911Chr08:21458563..21458587 (25 bp)
AGGCTCGTACGCTGGTTCCAGTGCA
LOC_Os08g34390
Os.56875.1.S1_at--907--1111Chr08:21458544..21458568 (25 bp)
AGTGCAGGCTCGTATGCCGGCTCCA
LOC_Os08g34390
Os.56875.1.S1_at--753--10131Chr08:21458421..21458445 (25 bp)
TATGCAGGGTCCAGAGCCGGCTCAT
LOC_Os08g34390
Os.56875.1.S1_at--650--851Chr08:21458381..21458405 (25 bp)
ATGGCAAGTAAGCTCGTCACGACCC
LOC_Os08g34390
Os.56875.1.S1_at--595--5811Chr08:21458361..21458385 (25 bp)
GACCCGCGTGAAGCTTACCAAAGAT
LOC_Os08g34390
Os.56875.1.S1_at--1143--10831Chr08:21458329..21458353 (25 bp)
TTGTGTGTTCCTAGCTTGTGTAGTT
LOC_Os08g34390
Os.56875.1.S1_at--139--6752Chr08:16413490..16413571 (25 bp)
GTTCAGATCACCTTATTCATGTATG
NONE
Os.56875.1.S1_at--580--9751Chr08:21458231..21458255 (25 bp)
TAATAAGCGCTACGCGCTTGCCTAT
LOC_Os08g34390
Os.56875.1.S1_at--363--4131Chr08:21458217..21458241 (25 bp)
CGCTTGCCTATCGATGTACACATTT
LOC_Os08g34390
Target Sequence 
ATCGGCCGGCTCGAGCGCTGAGTCAGGAGCCGGCTCGAACGCGGGGCCAGGTGGTGCGGGGTCATACGCCGGCTCCAGGG
CTGGCTCGTATGCTGGCTCGAATGGTGGAGATGGCGGCTCCGGCGCAGGCTCGTACGCTGGTTCCAGTGCAGGCTCGTAT
GCCGGCTCCAACGGCGGAGGCGCAGGGTCGTACGCTGGCTCGGAAGCCGGCTCGTACGCGGGCTCCGGTGCTGGCCCGCA
TGGAGGCTCTGGTGCCGGCTCCGGCTCGTATGCAGGGTCCAGAGCCGGCTCATACGCGGGCAGTGGCCATGGCAAGTAAG
CTCGTCACGACCCGCGTGAAGCTTACCAAAGATTATATTGTTGTGTGTTCCTAGCTTGTGTAGTTTGTGTTCTATGTGTT
CAGATCACCTTATTCATGTATGCATAAATAAGTGTGTAGGTGTTGATGAATGACTAATTAATAAGCGCTACGCGCTTGCC
TATCGATGTACACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis