Browse Element(s) Details


Os.56924.1.S1_at

Description gb:AK110589.1
DB_XREF= gi:32995798
TID=Os.56924.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F05, full insert sequence.
FL= gb:AK110589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4142011/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56924.1.S1_at--460--5011Chr05:24173208..24173232 (25 bp)
GCAGGCTGACACCAAGCTATCACTG
LOC_Os05g41420
Os.56924.1.S1_at--397--2651Chr05:24173332..24173356 (25 bp)
AACCACCGCTCGAGTGGTGGCGTGA
LOC_Os05g41420
Os.56924.1.S1_at--691--7191Chr05:24173390..24173414 (25 bp)
GTGCGGTTTGATGGACACCTAACTC
LOC_Os05g41420
Os.56924.1.S1_at--538--4771Chr05:24173413..24173437 (25 bp)
TCCCCAATAATTTGGTTGCGGCCGT
LOC_Os05g41420
Os.56924.1.S1_at--506--6411Chr05:24173491..24173515 (25 bp)
GATCTCTCCGCTTTAAGATATCCGA
LOC_Os05g41420
Os.56924.1.S1_at--390--5471Chr05:24173514..24173537 (24 bp)
GAACTGTTCGTCTACGGCGCGTGCG
LOC_Os05g41420
Os.56924.1.S1_at--664--5771Chr05:24173546..24173570 (25 bp)
GACGATGGCACTAAGGGCTCGTTAA
LOC_Os05g41420
Os.56924.1.S1_at--340--10431Chr05:24173618..24173642 (25 bp)
TTACTGTGTTAATTTCCCTGCAAAA
LOC_Os05g41420
Os.56924.1.S1_at--573--2291Chr05:24173640..24173664 (25 bp)
AAATGTAAGCGTTTGTCACCTCGTC
LOC_Os05g41420
Os.56924.1.S1_at--501--7091Chr05:24173654..24173678 (25 bp)
GTCACCTCGTCAGATGTTCAGAATG
LOC_Os05g41420
Os.56924.1.S1_at--648--9651Chr05:24173671..24173695 (25 bp)
TCAGAATGGTGGCATGCATATCTCT
LOC_Os05g41420
Target Sequence 
GCAGGCTGACACCAAGCTATCACTGCCCACTTCCAAAGGCGCCGCCGCCGCTGCGGAGGCGGAGGAGATCACCGGCGCCG
GAGAAGACGACGGCGACGGCGACGATGACGCGGAGCGCAGCAAGAACCACCGCTCGAGTGGTGGCGTGAGGTCATCATCG
GACTCCAATGGACATGGAGCTAGTGCGGTTTGATGGACACCTAACTCCCCAATAATTTGGTTGCGGCCGTCGACGCGTCG
ACGCGACGGCGACCGTCGCCATCGCCATGCGTGCGTCGACGTCGATCTCTCCGCTTTAAGATATCCGAACTGTTCGTCTA
CGGCGCGTGCGCTACGACGACGATGGCACTAAGGGCTCGTTAAATTTGGAAATGGAGGTTTTTGTTTGGTAGGAAATTTT
TGATGAACTTTTACTGTGTTAATTTCCCTGCAAAATGTAAGCGTTTGTCACCTCGTCAGATGTTCAGAATGGTGGCATGC
ATATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis