Browse Element(s) Details


Os.56938.1.S1_at

Description gb:AK110606.1
DB_XREF= gi:32995815
TID=Os.56938.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-G11, full insert sequence.
FL= gb:AK110606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2456011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein
LOC_Os03g24580Os.8894.1.S1_at10/113+13979319..13982817expressed protein
LOC_Os03g24590OsAffx.3309.1.S1_s_at11/113+13985064..13986149mTERF family protein, expressed
LOC_Os03g24600Os.6647.1.S1_a_at11/113+13988999..13992663Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os03g24610OsAffx.3310.1.S1_at11/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.20484.1.S1_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24610OsAffx.32313.1.S1_x_at1/113+13994093..13997475Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g24620OsAffx.22636.1.S1_at2/113+13998332..14003133retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56938.1.S1_at--781--8631Chr03:13975139..13975163 (25 bp)
TAGTGAAACCGGCTGCCAAGCCTGC
LOC_Os03g24560
Os.56938.1.S1_at--32--4971Chr03:13975036..13975060 (25 bp)
GCATGCACATGCGTCGACGACCGGG
LOC_Os03g24560
Os.56938.1.S1_at--693--2771Chr03:13974849..13974873 (25 bp)
AAGACCAGGGTGAGCTCCAGAGTGC
LOC_Os03g24560
Os.56938.1.S1_at--930--8911Chr03:13974839..13974863 (25 bp)
TGAGCTCCAGAGTGCGCAAGGCCTT
LOC_Os03g24560
Os.56938.1.S1_at--891--1171Chr03:13974806..13974830 (25 bp)
AGTAGAGACACATCACAATTCACAC
LOC_Os03g24560
Os.56938.1.S1_at--572--2091Chr03:13974783..13974807 (25 bp)
ACATCCATGGCCACCGTAGTGTGAA
LOC_Os03g24560
Os.56938.1.S1_at--260--10071Chr03:13974767..13974791 (25 bp)
TAGTGTGAAGCAGAAGCAACCCAAT
LOC_Os03g24560
Os.56938.1.S1_at--1086--8751Chr03:13974723..13974747 (25 bp)
TGTACCTTGAGGACTTTGTGTGAAC
LOC_Os03g24560
Os.56938.1.S1_at--655--7451Chr03:13974706..13974730 (25 bp)
GTGTGAACCTAAGTACTCTATCCGT
LOC_Os03g24560
Os.56938.1.S1_at--1063--8771Chr03:13974678..13974702 (25 bp)
TGTTTTTTAACGTATGACATCGCTG
LOC_Os03g24560
Os.56938.1.S1_at--974--2571Chr03:13974670..13974694 (25 bp)
AACGTATGACATCGCTGAATTTTAA
LOC_Os03g24560
Target Sequence 
TAGTGAAACCGGCTGCCAAGCCTGCGGGCGGCAACGCTCCGGCGCCTGTCGTGTTGCCGTCGGCGCCGGCTGCAAGGCCG
CCGCCACCGTCGCGTCGCCATGGGCATGCACATGCGTCGACGACCGGGAGCGCACCTGCCGCCGAGAAGGTGGCGGCAAC
GACGACGAGGCCGCCACCGGGGATTCCGGTGCCCGTGCCGCCGCCGGCTGCTGCTGCTGCCGCTGATGTCACCACCGCCG
CGGCGGACGCGAAGGAGGGCGATGGTGACAAGGAGCAGCAAGGGAAGGGGAAGACCAGGGTGAGCTCCAGAGTGCGCAAG
GCCTTCTCCTCCAAGTAGAGACACATCACAATTCACACATCCATGGCCACCGTAGTGTGAAGCAGAAGCAACCCAATAAC
TAACTACTGAAAAATATGTACCTTGAGGACTTTGTGTGAACCTAAGTACTCTATCCGTTATTGTTTTTTAACGTATGACA
TCGCTGAATTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis