Browse Element(s) Details


Os.56998.1.S1_at

Description gb:AK110717.1
DB_XREF= gi:32995926
TID=Os.56998.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D08, full insert sequence.
FL= gb:AK110717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4026011/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56998.1.S1_at--978--9651Chr07:24135302..24135326 (25 bp)
TCACCAACGGGTCGGTACAGTTCGT
LOC_Os07g40260
Os.56998.1.S1_at--969--9851Chr07:24135287..24135311 (25 bp)
TACAGTTCGTTTTTTGCCCTCCGCT
LOC_Os07g40260
Os.56998.1.S1_at--620--771Chr07:24135192..24135216 (25 bp)
ATGTCGCCGCGTGTTGTTCGTGCTG
LOC_Os07g40260
Os.56998.1.S1_at--191--6711Chr07:24135177..24135201 (25 bp)
GTTCGTGCTGGTTTAGGTATTACAC
LOC_Os07g40260
Os.56998.1.S1_at--510--1011Chr07:24135042..24135066 (25 bp)
AGGTCGGCCTGGATTCGTCAAATTC
LOC_Os07g40260
Os.56998.1.S1_at--331--111Chr07:24135030..24135054 (25 bp)
ATTCGTCAAATTCTCTGCTTACCTG
LOC_Os07g40260
Os.56998.1.S1_at--458--3771Chr07:24135018..24135042 (25 bp)
CTCTGCTTACCTGTTTGAATTGTGT
LOC_Os07g40260
Os.56998.1.S1_at--606--6571Chr07:24134943..24134967 (25 bp)
GATTCCCATATGTCAAACTGTCGCT
LOC_Os07g40260
Os.56998.1.S1_at--216--2551Chr07:24134928..24134952 (25 bp)
AACTGTCGCTTGACCATTCAGGTTG
LOC_Os07g40260
Os.56998.1.S1_at--922--6431Chr07:24134881..24134905 (25 bp)
GATACATTTTTGTCGGGCTTGGGTG
LOC_Os07g40260
Os.56998.1.S1_at--255--8291Chr07:24134866..24134890 (25 bp)
GGCTTGGGTGTGTGCATAGACATTT
LOC_Os07g40260
Target Sequence 
TCACCAACGGGTCGGTACAGTTCGTTTTTTGCCCTCCGCTCTCTCTCTCTCGATAATTTCCCCCAAATTTTTTTTTCTTG
GGGGGGTTGCGTGGTTGGATCTGAGGCTGGATGTCGCCGCGTGTTGTTCGTGCTGGTTTAGGTATTACACGACGAGGCTG
TACATCGGGACGCCTTCGCAGGAGTTCGCGCTGATCGTGGACTCCGGGAGCACCGTCACCTACGTTCCCTGCGCCACCTG
CGAGCAGTGCGGCAACCACCAGGTCGGCCTGGATTCGTCAAATTCTCTGCTTACCTGTTTGAATTGTGTGTGACGATCGG
TTTAATTAGGATTGGTGATGGTCGCGTGTATGGATATTGGATTCCCATATGTCAAACTGTCGCTTGACCATTCAGGTTGG
ACAATTGACTCCAGTGCAAATGATACATTTTTGTCGGGCTTGGGTGTGTGCATAGACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis