Browse Element(s) Details


Os.57006.1.S1_at

Description gb:AK110733.1
DB_XREF= gi:32995942
TID=Os.57006.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E12, full insert sequence.
FL= gb:AK110733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein
LOC_Os09g28550Os.49767.1.S1_x_at9/119+17358273..17359272expressed protein
LOC_Os09g28550Os.49767.1.S1_at8/119+17358273..17359272expressed protein
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57006.1.S1_at--1108--4331Chr09:17350938..17350962 (25 bp)
CCATGGTTGGCCAGATCGGATGCAT
LOC_Os09g28520
Os.57006.1.S1_at--1039--3551Chr09:17350995..17351019 (25 bp)
CATCACTCATATTCACTCTTGCTGA
LOC_Os09g28520
Os.57006.1.S1_at--318--4751Chr09:17351015..17351039 (25 bp)
GCTGATGATCTTAGCAGCTCATTCT
LOC_Os09g28520
Os.57006.1.S1_at--510--9031Chr09:17351052..17351076 (25 bp)
TGCAGGGCAAATGGCCATTTCCTTT
LOC_Os09g28520
Os.57006.1.S1_at--863--191Chr09:17351068..17351092 (25 bp)
ATTTCCTTTTACCTCTTTGCTGCAT
LOC_Os09g28520
Os.57006.1.S1_at--771--8751Chr09:17351170..17351194 (25 bp)
TGTAGTCAAATTAACTCCGCTGCGC
LOC_Os09g28520
Os.57006.1.S1_at--1072--4771Chr09:17351188..17351212 (25 bp)
GCTGCGCCTCTGATGTTTTGTATTG
LOC_Os09g28520
Os.57006.1.S1_at--864--2291Chr09:17351226..17351250 (25 bp)
AAATGTATTTTTCCCCACATGGTGT
LOC_Os09g28520
Os.57006.1.S1_at--682--3311Chr09:17351241..17351265 (25 bp)
CACATGGTGTGGTCCTAGCTTAGCT
LOC_Os09g28520
Os.57006.1.S1_at--1021--4291Chr09:17351254..17351278 (25 bp)
CCTAGCTTAGCTTTTGTACGTGTTG
LOC_Os09g28520
Os.57006.1.S1_at--609--6991Chr09:17351269..17351293 (25 bp)
GTACGTGTTGTTTAGCTGTTCCCAT
LOC_Os09g28520
Target Sequence 
CCATGGTTGGCCAGATCGGATGCATGGTGGCGATGCGCCTTTCAGCTTGCTGTCTGCCATCACTCATATTCACTCTTGCT
GATGATCTTAGCAGCTCATTCTAATGGAGAACTCTGCAGGGCAAATGGCCATTTCCTTTTACCTCTTTGCTGCATCTTTT
TTGGGTGTAAAAGGGAATTTTGATCTCTAGTTTTTGGGTAATGGTCGTCGTCGGGTAGATGGGTGGTTCCAGTGTAGTCA
AATTAACTCCGCTGCGCCTCTGATGTTTTGTATTGGAAGGGCCAGTAAAAATGTATTTTTCCCCACATGGTGTGGTCCTA
GCTTAGCTTTTGTACGTGTTGTTTAGCTGTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis