Browse Element(s) Details


Os.52947.1.S1_s_at

Description gb:AK070055.1
DB_XREF= gi:32980079
TID=Os.52947.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039M22, full insert sequence.
FL= gb:AK070055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52947.1.S1_s_at--599--9152Chr09:17323909..17323933 (25 bp)
TGCCGCTGCCGTTGACCGTTCCGGA
LOC_Os09g28480
Os.52947.1.S1_s_at--589--7331Chr09:17323921..17323945 (25 bp)
TGACCGTTCCGGACACCGAGCCGAT
LOC_Os09g28480
Os.52947.1.S1_s_at--672--1791Chr09:17323935..17323959 (25 bp)
ACCGAGCCGATGTCCCGCGAGGAGC
LOC_Os09g28480
Os.52947.1.S1_s_at--433--4531Chr09:17323966..17323990 (25 bp)
GCCGCCTCAGCTGCGACGTGGAGAT
LOC_Os09g28480
Os.52947.1.S1_s_at--19--4471Chr09:17323969..17323993 (25 bp)
GCCTCAGCTGCGACGTGGAGATCGA
LOC_Os09g28480
Os.52947.1.S1_s_at--706--6391Chr09:17323988..17324122 (25 bp)
GATCGAGGATTGCAAGACTGTCTCC
LOC_Os09g28480
Os.52947.1.S1_s_at--238--7931Chr09:17324104..17324128 (25 bp)
GGATTGCAAGACTGTCTCCTACGAG
LOC_Os09g28480
Os.52947.1.S1_s_at--358--9011Chr09:17324108..17324132 (25 bp)
TGCAAGACTGTCTCCTACGAGTGGA
LOC_Os09g28480
Os.52947.1.S1_s_at--814--1391Chr09:17324112..17324136 (25 bp)
AGACTGTCTCCTACGAGTGGACGGG
LOC_Os09g28480
Os.52947.1.S1_s_at--922--7151Chr09:17324117..17324141 (25 bp)
GTCTCCTACGAGTGGACGGGCAAGT
LOC_Os09g28480
Os.52947.1.S1_s_at--946--9231Chr09:17324120..17324144 (25 bp)
TCCTACGAGTGGACGGGCAAGTGCC
LOC_Os09g28480
Target Sequence 
TGCCGCTGCCGTTGACCGTTCCGGACACCGAGCCGATGTCCCGCGAGGAGCTCGACCGCCGCCTCAGCTGCGACGTGGAG
ATCGAGGATTGCAAGACTGTCTCCTACGAGTGGACGGGCAAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52947.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis