Browse Element(s) Details


Os.33211.1.S1_at

Description gb:AK101358.1
DB_XREF= gi:32986567
TID=Os.33211.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035C14, full insert sequence.
FL= gb:AK101358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2843010/11Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g284201/11Alpha-amylase isozyme 3B precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33211.1.S1_at--173--9191Chr09:17303371..17303395 (25 bp)
TGCCGGAGAAGGCTGTCACCTTCAT
LOC_Os09g28430
Os.33211.1.S1_at--26--531Chr09:17303394..17303418 (25 bp)
ATCGACAATCATGACACTGGCTCCA
LOC_Os09g28430
Os.33211.1.S1_at--543--1952Chr09:17303409..17303433 (25 bp)
ACTGGCTCCACACAGAACTCATGGC
LOC_Os09g28430
Os.33211.1.S1_at--519--5851Chr09:17303598..17303622 (25 bp)
GACCATGTGTTTGACTGGAACTTGA
LOC_Os09g28430
Os.33211.1.S1_at--130--6051Chr09:17303628..17303652 (25 bp)
GAGATCAGCACATTGGCCGCGGTGA
LOC_Os09g28430
Os.33211.1.S1_at--597--2071Chr09:17303637..17303661 (25 bp)
ACATTGGCCGCGGTGAGGTCAAGAA
LOC_Os09g28430
Os.33211.1.S1_at--677--8051NONE
GGAGATGTCTACGTCGCAATGATCG
NONE
Os.33211.1.S1_at--1159--3131Chr09:17303816..17303840 (25 bp)
CAATTACTGCGTCTGGGAAAAGAGT
LOC_Os09g28430
Os.33211.1.S1_at--452--2791Chr09:17303835..17303859 (25 bp)
AAGAGTGGTCTTAGAGTTCCAGCAG
LOC_Os09g28430
Os.33211.1.S1_at--789--1051Chr09:17303858..17303882 (25 bp)
AGGGCGGCGCCACTAGGCCAAATAT
LOC_Os09g28430
Os.33211.1.S1_at--145--871Chr09:17303872..17303896 (25 bp)
AGGCCAAATATTTCTTTCAGGACTA
LOC_Os09g28430
Target Sequence 
TGCCGGAGAAGGCTGTCACCTTCATCGACAATCATGACACTGGCTCCACACAGAACTCATGGCCGTTCCCCTCCGACAAG
GTCATGCAGGGCTACGCCTACATCCTCACACACCCTGGAGTACCCTGCATTTTCTACGACCATGTGTTTGACTGGAACTT
GAAGCAGGAGATCAGCACATTGGCCGCGGTGAGGTCAAGAAATGGAATTCATCCTGGGAGCAAGCTGAACATCCTTGCTG
CTGACGGAGATGTCTACGTCGCAATGATCGATGACAAGGTGATCACAAAGATTGGGACTCGGTATGATGTGGGCAACTTG
ATCCCGTCAGACTTCCATGTCGTTGCTCACGGCAACAATTACTGCGTCTGGGAAAAGAGTGGTCTTAGAGTTCCAGCAGG
GCGGCGCCACTAGGCCAAATATTTCTTTCAGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis